BQ623442
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.933e-40 Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 302
EHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISF+ AKPPGV
Sbjct: 111 EHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180 HSP 2 Score: 50.447 bits (119), Expect = 3.933e-40 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
EAL KEI YL+R+ WIPCLEFELE G+VY
Sbjct: 81 EALSKEIDYLIRNKWIPCLEFELEHGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.728e-37 Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
EHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct: 111 EHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179 HSP 2 Score: 51.6026 bits (122), Expect = 1.728e-37 Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E LL EI YLL+SGW+PCLEFE E+G+VY
Sbjct: 81 EQLLSEIEYLLKSGWVPCLEFETERGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.821e-37 Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
EHH SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E + YP++F+RIIGFDN RQVQCISF+A KPP
Sbjct: 109 EHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176 HSP 2 Score: 50.447 bits (119), Expect = 3.821e-37 Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 2
Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
L KE+ YLLR GWIPCLEFELE G+VY
Sbjct: 81 LAKEVEYLLRKGWIPCLEFELEHGFVY 107
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.432e-36 Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
EHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP
Sbjct: 111 EHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177 HSP 2 Score: 50.447 bits (119), Expect = 1.432e-36 Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E LLKEI YLL+ GW+PCLEFE E G+VY
Sbjct: 81 EQLLKEIEYLLQKGWVPCLEFETEHGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.433e-36 Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct: 114 ENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182 HSP 2 Score: 50.0618 bits (118), Expect = 1.433e-36 Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E+L KE+ YLLR W+PCLEFELE G+VY
Sbjct: 84 ESLAKEVDYLLRKNWVPCLEFELETGFVY 112
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.433e-36 Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct: 114 ENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182 HSP 2 Score: 50.0618 bits (118), Expect = 1.433e-36 Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E+L KE+ YLLR W+PCLEFELE G+VY
Sbjct: 84 ESLAKEVDYLLRKNWVPCLEFELEHGFVY 112
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.867e-36 Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct: 112 ENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180 HSP 2 Score: 50.8322 bits (120), Expect = 1.867e-36 Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E LLKE+ YLL++GW+PCLEFE E G+VY
Sbjct: 82 EQLLKEVEYLLKNGWVPCLEFETEHGFVY 110
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.867e-36 Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct: 112 ENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180 HSP 2 Score: 50.8322 bits (120), Expect = 1.867e-36 Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E LLKE+ YLL++GW+PCLEFE E G+VY
Sbjct: 82 EQLLKEVEYLLKNGWVPCLEFETEHGFVY 110
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 4.127e-36 Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct: 111 ENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179 HSP 2 Score: 49.2914 bits (116), Expect = 4.127e-36 Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E LL EI YLL++GW+PCLEFE E G+VY
Sbjct: 81 EQLLSEIEYLLKNGWVPCLEFETEHGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 4.127e-36 Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct: 111 ENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179 HSP 2 Score: 49.2914 bits (116), Expect = 4.127e-36 Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E LL EI YLL++GW+PCLEFE E G+VY
Sbjct: 81 EQLLSEIEYLLKNGWVPCLEFETEHGFVY 109 The following BLAST results are available for this feature:
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 112
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623442 ID=BQ623442; Name=BQ623442; organism=Citrus sinensis; type=EST; length=449bpback to top |