BQ623444

Overview
NameBQ623444
Unique NameBQ623444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:644..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.175e-31
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  189 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          

HSP 2 Score: 33.4982 bits (75), Expect = 1.175e-31
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPL LADDPEAFAE
Sbjct:  173 SFDPLALADDPEAFAE 188          

HSP 3 Score: 25.409 bits (54), Expect = 1.175e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:    1 VTDPLYPGGS 30
            VTDP+YPGGS
Sbjct:  164 VTDPIYPGGS 173          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.264e-31
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          

HSP 2 Score: 36.965 bits (84), Expect = 1.264e-31
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 2
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDPEAFAE
Sbjct:  193 AFDPLGLADDPEAFAE 208          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.978e-31
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          

HSP 2 Score: 32.7278 bits (73), Expect = 1.978e-31
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADD EAFAE
Sbjct:  192 SFDPLGLADDAEAFAE 207          

HSP 3 Score: 25.409 bits (54), Expect = 1.978e-31
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:    1 VTDPLYPGGSL*SIG 45
            V DPLYPGGS   +G
Sbjct:  183 VVDPLYPGGSFDPLG 197          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.792e-31
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  205 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          

HSP 2 Score: 35.8094 bits (81), Expect = 2.792e-31
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  189 SFDPLGLADDPEAFAE 204          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.736e-31
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  199 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          

HSP 2 Score: 35.8094 bits (81), Expect = 4.736e-31
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  183 SFDPLGLADDPEAFAE 198          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.754e-31
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  150 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          

HSP 2 Score: 35.8094 bits (81), Expect = 4.754e-31
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  134 SFDPLGLADDPEAFAE 149          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.163e-31
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            VKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  209 VKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          

HSP 2 Score: 34.2686 bits (77), Expect = 6.163e-31
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 2
Query:   32 FDPLGLADDPEAFAE 76
            FDPLGLADDPEAFA+
Sbjct:  194 FDPLGLADDPEAFAD 208          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.163e-31
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          

HSP 2 Score: 35.8094 bits (81), Expect = 6.163e-31
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  195 SFDPLGLADDPEAFAE 210          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.026e-31
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          

HSP 2 Score: 34.2686 bits (77), Expect = 8.026e-31
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  195 SFDPLGLAEDPEAFAE 210          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.026e-31
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          

HSP 2 Score: 34.2686 bits (77), Expect = 8.026e-31
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  195 SFDPLGLAEDPEAFAE 210          
The following BLAST results are available for this feature:
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB21_SOYBN1.175e-3196.49Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_ORYSJ1.264e-3198.25Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_HORVU1.978e-3196.49Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_ORYSJ2.792e-3198.25Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_CUCSA4.736e-3196.49Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA4.754e-3196.49Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB29_MAIZE6.163e-3198.25Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB25_PETSP6.163e-3196.49Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB24_TOBAC8.026e-3198.25Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL8.026e-3198.25Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00535 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00535 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623444 ID=BQ623444; Name=BQ623444; organism=Citrus sinensis; type=EST; length=343bp
GTGACTGACCCATTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGG
CTGATGACCCGGAGGCTTTTGCTGAGCGTCAAGGTTAAGGAAATCAAGAA
TGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTG
TCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCT
GTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTG
AGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGT
AAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGAT
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