BQ623446

Overview
NameBQ623446
Unique NameBQ623446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623446_ssr307 microsatellite BQ623446_ssr307:307..318. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13763 contig Csv1_Contig13763:264..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.377e-37
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 2
Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            + G   SQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   72 KGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          

HSP 2 Score: 37.3502 bits (85), Expect = 1.377e-37
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 1
Query:    1 FAGVDMRIRVKGGGHT 48
            FAGVDMRIRVKGGGHT
Sbjct:   62 FAGVDMRIRVKGGGHT 77          
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.526e-36
Identity = 68/74 (91.89%), Postives = 69/74 (93.24%), Query Frame = 2
Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            + G   SQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   72 KGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          

HSP 2 Score: 35.8094 bits (81), Expect = 2.526e-36
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 1
Query:    1 FAGVDMRIRVKGGGHT 48
            F GVDMRIRVKGGGHT
Sbjct:   62 FTGVDMRIRVKGGGHT 77          
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.095e-35
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 2
Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            + G   SQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:   69 KGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 142          

HSP 2 Score: 34.6538 bits (78), Expect = 2.095e-35
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 1
Query:    1 FAGVDMRIRVKGGGHT 48
            FAGVDMRIRVKGGG+T
Sbjct:   59 FAGVDMRIRVKGGGNT 74          
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.629e-35
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 2
Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G   SQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:   75 GGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          

HSP 2 Score: 33.4982 bits (75), Expect = 4.629e-35
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 1
Query:    1 FAGVDMRIRVKGGGHT 48
            FAGV+MRIRV GGGHT
Sbjct:   63 FAGVNMRIRVNGGGHT 78          
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.629e-35
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 2
Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G   SQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:   75 GGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          

HSP 2 Score: 33.4982 bits (75), Expect = 4.629e-35
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 1
Query:    1 FAGVDMRIRVKGGGHT 48
            FAGV+MRIRV GGGHT
Sbjct:   63 FAGVNMRIRVNGGGHT 78          
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.023e-34
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 2
Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            R G   SQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:   72 RGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 145          

HSP 2 Score: 31.187 bits (69), Expect = 1.023e-34
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 1
Query:    1 FAGVDMRIRVKGGGHT 48
            F GVDMRIRV+GGG T
Sbjct:   62 FVGVDMRIRVRGGGKT 77          
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 9.137e-33
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 2
Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            R G   SQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          

HSP 2 Score: 27.7202 bits (60), Expect = 9.137e-33
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 1
Query:    1 FAGVDMRIRVKGGGHT 48
            F  +DMRIRV+GGG T
Sbjct:   66 FKDIDMRIRVRGGGKT 81          
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 9.137e-33
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 2
Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            R G   SQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          

HSP 2 Score: 27.7202 bits (60), Expect = 9.137e-33
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 1
Query:    1 FAGVDMRIRVKGGGHT 48
            F  +DMRIRV+GGG T
Sbjct:   66 FKDIDMRIRVRGGGKT 81          
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.191e-32
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 2
Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G   S++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRCE KKFGG GARARFQKSYR
Sbjct:   75 GGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146          

HSP 2 Score: 30.8018 bits (68), Expect = 1.191e-32
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 1
Query:    1 FAGVDMRIRVKGGGHT 48
            FAGVDMRIR  GGG+T
Sbjct:   63 FAGVDMRIRATGGGNT 78          
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.630e-32
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 2
Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            + G  ++QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:   73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          

HSP 2 Score: 33.4982 bits (75), Expect = 2.630e-32
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1
Query:    1 FAGVDMRIRVKGGGH 45
            FAGVD+R+RVKGGGH
Sbjct:   63 FAGVDIRVRVKGGGH 77          
The following BLAST results are available for this feature:
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RS16_LUPPO1.377e-3793.2440S ribosomal protein S16 OS=Lupinus polyphyllus G... [more]
RS16_GOSHI2.526e-3691.8940S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS16_TORRU2.095e-3586.4940S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS163_ARATH4.629e-3590.2840S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS161_ARATH4.629e-3590.2840S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS16_FRIAG1.023e-3487.8440S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS16_ORYSJ9.137e-3386.4940S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI9.137e-3386.4940S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS162_ARATH1.191e-3287.5040S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_RAT2.630e-3281.0840S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00537 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00537 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623446 ID=BQ623446; Name=BQ623446; organism=Citrus sinensis; type=EST; length=445bp
TTCGCCGGCGTGGACATGAGAATCCGCGTGAAGGGCGGGGGACACACTGT
CGCAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCTCTCGTGGCTTTC
TACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGAGATTAAGGACATTCT
CGTTAGGTACGACAGGACCCTGCTTGTGGCAGACCCACGCCGGTGCGAGC
CCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGGTTCCAGAAGAGTTAC
CGTTGAGCGGGAATGCAAGGAAGCGAAACGAAACGGCTTTTCGTTTTGCT
ATTTTAGTTTGTTTGTTTTACTTTTTTATGAAATTTTGGTTATTTTGAGA
CTGGATCATTAAATGTTAGTAGTTTATGAGATATTAAGGCTTTGGTGAGG
CGGTAATGAATTACTGTTGAAGGTTAAATTTTGTAATGGATGATA
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