BQ623448

Overview
NameBQ623448
Unique NameBQ623448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1618 contig Csv1_Contig1618:106..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623448 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.643e-47
Identity = 113/213 (53.05%), Postives = 134/213 (62.91%), Query Frame = 2
Query:    5 MAEEQVKKVEA*DASGPSVQLQRLXXXXXXXXXNNDVAEEKAVTQ------LHDQEKPVDDSKALAVVD-QTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 622
            MAE + KKVE  D + P+                  VA+EKA+          ++EKP DDSKAL VV+ + P+                DRD  LA V  EKR S IKAWEESEK+KAENKAQKK+SA+ AWEN              EQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+EA+RGED+LKAEE+AAKYRATGT PKK+LG F
Sbjct:    1 MAELEAKKVEIVDPAPPA--------PGPVEAPKEVVADEKAIVAPALPPPAEEKEKP-DDSKALVVVETKAPEPADEKKEGSI------DRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198          
BLAST of BQ623448 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.302e-44
Identity = 99/171 (57.89%), Postives = 117/171 (68.42%), Query Frame = 2
Query:  110 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 622
            DVAEEK   Q    E+  DDSKAL VV++  +                DRDV LA++ KEKR SF++AWEESEK+KAENKA+KK++ V AWEN              EQLE+KKAEYAE+MKNKVA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   GCF
Sbjct:   48 DVAEEKI--QNPPPEQIFDDSKALTVVEKPVEEPAPAKPASASL----DRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212          
BLAST of BQ623448 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.897e-42
Identity = 104/206 (50.49%), Postives = 128/206 (62.14%), Query Frame = 2
Query:    5 MAEEQVKKVEA*DASGPSVQLQRLXXXXXXXXXNNDVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 622
            MAEEQ  K    D   P+V    L           +VA+EK    +H+   P  +SKALAVV++  +                DRDV LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+S V AWEN              E+LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE++LKAEE+ AKYRATG  PK   GCF
Sbjct:    1 MAEEQ--KTSKVDVESPAV----LAPAKEPTPAPVEVADEK----IHNP--PPVESKALAVVEKPIEEHTPKKASSGSA----DRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190          
The following BLAST results are available for this feature:
BLAST of BQ623448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU1.643e-4753.05Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH1.302e-4457.89Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH7.897e-4250.49Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00539 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00539 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623448 ID=BQ623448; Name=BQ623448; organism=Citrus sinensis; type=EST; length=644bp
GATAATGGCAGAGGAGCAAGTGAAGAAAGTAGAAGCCTGAGACGCCAGCG
GCCCCAGCGTCCAGCTCCAGCGTCTTGCTCCAGCTCCGGCTCCGGCTGTC
CCCAACAACGACGTCGCGGAGGAGAAAGCTGTTACTCAATTACATGATCA
AGAGAAGCCTGTTGATGACTCCAAAGCTCTCGCAGTAGTTGATCAAACTC
CAGATTCGGCCAAAAAGAAAATTTCTGGGGAAAAGAAAATTTCTGGATCG
CATGATAGAGATGTTGCTCTTGCAGAGGTCGAAAAGGAAAAGAGAGAGTC
TTTTATCAAGGCATGGGAAGAGAGTGAAAAAACAAAAGCAGAGAATAAGG
CTCAGAAAAAGCTCTCAGCTGTTGCTGCATGGGAAAATAGCAAGAAAGCA
TCTCTAGAAGCCAAACTGAAAAAGATTGAGGAACAACTGGAGAGGAAGAA
GGCAGAGTATGCTGAAAAAATGAAAAATAAGGTAGCTCTAGTTCACAAGG
AAGCAGAAGAGAAAAGGGCAATGGTTGAAGCTAGACGGGGAGAAGACGTT
CTTAAGGCTGAGGAGATAGCTGCAAAATATCGGGCTACTGGGACCACTCC
AAAGAAGCTCCTCGGTTGCTTCTGAAATCAAATTGTTTTTGCAA
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