BQ623457

Overview
NameBQ623457
Unique NameBQ623457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2570 contig Csv1_Contig2570:535..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623457 vs. ExPASy Swiss-Prot
Match: TM111_PONAB (Transmembrane protein 111 OS=Pongo abelii GN=TMEM111 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 5.886e-16
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 3
Query:    3 GIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRAETVLKDL 269
            GI+L T+D S+VSS SWYFLN+FGLR ++SLILG++NA D ++ M  QM+G       D +K+   E ++L++  H+WAL   E+  E + KDL
Sbjct:  155 GIELLTLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE--ELMAKDL 246          
BLAST of BQ623457 vs. ExPASy Swiss-Prot
Match: TM111_HUMAN (Transmembrane protein 111 OS=Homo sapiens GN=TMEM111 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 5.886e-16
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 3
Query:    3 GIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRAETVLKDL 269
            GI+L T+D S+VSS SWYFLN+FGLR ++SLILG++NA D ++ M  QM+G       D +K+   E ++L++  H+WAL   E+  E + KDL
Sbjct:  155 GIELLTLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE--ELMAKDL 246          
BLAST of BQ623457 vs. ExPASy Swiss-Prot
Match: TM111_BOVIN (Transmembrane protein 111 OS=Bos taurus GN=TMEM111 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 5.886e-16
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 3
Query:    3 GIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRAETVLKDL 269
            GI+L T+D S+VSS SWYFLN+FGLR ++SLILG++NA D ++ M  QM+G       D +K+   E ++L++  H+WAL   E+  E + KDL
Sbjct:  155 GIELLTLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE--ELMAKDL 246          
BLAST of BQ623457 vs. ExPASy Swiss-Prot
Match: TM111_RAT (Transmembrane protein 111 OS=Rattus norvegicus GN=Tmem111 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.311e-15
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 3
Query:    3 GIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRAETVLKDL 269
            GI+L T+D S+VSS SWYFLN+FGLR ++SLILG++NA D ++ M  QM+G       D +K+   E ++L++  H+WAL   E+  E + +DL
Sbjct:  155 GIELLTLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE--ELMARDL 246          
BLAST of BQ623457 vs. ExPASy Swiss-Prot
Match: TM111_MOUSE (Transmembrane protein 111 OS=Mus musculus GN=Tmem111 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.311e-15
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 3
Query:    3 GIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRAETVLKDL 269
            GI+L T+D S+VSS SWYFLN+FGLR ++SLILG++NA D ++ M  QM+G       D +K+   E ++L++  H+WAL   E+  E + +DL
Sbjct:  155 GIELLTLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE--ELMARDL 246          
BLAST of BQ623457 vs. ExPASy Swiss-Prot
Match: TM111_DANRE (Transmembrane protein 111 OS=Danio rerio GN=tmem111 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.921e-15
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 3
Query:    3 GIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRAETVLKDL 269
            GI+L ++D S+VSS SWYFLN+FGLR ++SLILG++N  D ++ M  QMSG       D +K+  AE ++L++  H+WAL   E+  + + KDL
Sbjct:  155 GIELLSLDASWVSSASWYFLNVFGLRSMYSLILGQDNGADQSRIMQEQMSGAAMAMPADTNKAFKAEWEALELTDHQWALENVEE--DLMSKDL 246          
BLAST of BQ623457 vs. ExPASy Swiss-Prot
Match: YNY3_SCHPO (UPF0347 membrane protein C1711.03 OS=Schizosaccharomyces pombe GN=SPBC1711.03 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 36/93 (38.71%), Postives = 55/93 (59.14%), Query Frame = 3
Query:    3 GIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMMQMSGF------------GFDPSKSLGAEKDSLDIIQHEWALPKFEQR 245
            G+    +DV +VSS SWYFLNLFGL+ +++L+LGE NA  +    M M+GF            G D SK + +E +++ I+++E  L   E+R
Sbjct:  160 GVATQDLDVQWVSSISWYFLNLFGLKSVYALLLGENNAASNATNEMGMAGFSSAAATAQLIQPGQDISKMMLSEAENVQILKNESLLVDVEKR 252          
The following BLAST results are available for this feature:
BLAST of BQ623457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM111_PONAB5.886e-1646.81Transmembrane protein 111 OS=Pongo abelii GN=TMEM1... [more]
TM111_HUMAN5.886e-1646.81Transmembrane protein 111 OS=Homo sapiens GN=TMEM1... [more]
TM111_BOVIN5.886e-1646.81Transmembrane protein 111 OS=Bos taurus GN=TMEM111... [more]
TM111_RAT1.311e-1545.74Transmembrane protein 111 OS=Rattus norvegicus GN=... [more]
TM111_MOUSE1.311e-1545.74Transmembrane protein 111 OS=Mus musculus GN=Tmem1... [more]
TM111_DANRE2.921e-1545.74Transmembrane protein 111 OS=Danio rerio GN=tmem11... [more]
YNY3_SCHPO9.725e-1138.71UPF0347 membrane protein C1711.03 OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00548 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00548 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623457 ID=BQ623457; Name=BQ623457; organism=Citrus sinensis; type=EST; length=514bp
ATGGGATTGACTTGAGCACTGTTGATGTAAGCTATGTCAGTAGTCGTTCA
TGGTACTTCCTCAATTTGTTTGGACTGAGGGGTTTATTTAGCCTCATTCT
GGGGGAAGAAAATGCTACTGATGATACTCAGCGTATGATGCAAATGAGTG
GGTTTGGCTTTGACCCAAGCAAGAGCTTGGGTGCTGAGAAAGACAGTCTG
GACATAATTCAGCATGAATGGGCCTTACCAAAATTTGAGCAGCGTGCTGA
AACAGTATTGAAAGATCTTGTCGGTTGAACAATGGTGATCTGTTGTTATT
TGTTGAATTATAGCATCGGGAATGGTTCCTTGGTGATTTTCATCCATTTG
GTGGACATCTGGGAACGGCTTTGAAGCCAGCATGACTTTAAATCTTCTAT
AAACCACTGTTTTAATTCCCAGTTTTATCTTGTAAGTTAAGCATCATTAT
TTGAGAAATTTTTGGTTTTACTAACTAAACATGCGTTGTAGAGTTGGTGG
AGTAATTTATGGTT
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