BQ623458

Overview
NameBQ623458
Unique NameBQ623458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8906 contig Csv1_Contig8906:397..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623458 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 6.818e-24
Identity = 51/81 (62.96%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 DATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXXAFAVRHYTKKE 243
            DATNDFEDVGHSD+AR+MMDKY+IG+ID S+VP  R Y+ PQQPAYNQDKTPEF                A  VRHYTKK+
Sbjct:   54 DATNDFEDVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILGLALVVRHYTKKD 134          
BLAST of BQ623458 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.772e-23
Identity = 51/81 (62.96%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 DATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXXAFAVRHYTKKE 243
            DATNDFEDVGHSD+AR+MM+KYYIG+ID STVP  R Y+ P QPAYNQDKTPEF                A  VR YTKKE
Sbjct:   54 DATNDFEDVGHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILGLALVVRQYTKKE 134          
BLAST of BQ623458 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.055e-21
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 DATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXXAFAVRHYTKKE 243
            DAT+DFEDVGHS +AR MMD+YY+GDID ST+P +  Y+PP+QP YNQDKTPEF                A A+R YTK E
Sbjct:   55 DATDDFEDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGLAVAIRIYTKSE 135          
BLAST of BQ623458 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.973e-20
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 DATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXXAFAVRHYTK 237
            DAT+DFEDVGHS+SAREMM++YY+G+IDP+T+P+K  Y PP+QP YNQDKT EF                A  +R YTK
Sbjct:   54 DATDDFEDVGHSESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVGIRIYTK 132          
BLAST of BQ623458 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.331e-19
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 DATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXXAFAVRHYTKK 240
            DAT+DFEDVGHS SAR M+D+YY+GDID +T+P K  Y PP QP YNQDKT EF                AF +R YTK+
Sbjct:   54 DATDDFEDVGHSSSARAMLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILGVAFGIRFYTKQ 133          
BLAST of BQ623458 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.964e-19
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 DATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXXAFAVRHYTKK 240
            DAT+DFED+GHS SAR M+D+YY+GDID ST+P K  Y PP+QP YNQDKT EF                AF V  YTK+
Sbjct:   54 DATDDFEDIGHSSSARAMLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILGVAFGVHFYTKQ 133          
BLAST of BQ623458 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.536e-18
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 DATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXXAFAVRHYTKK 240
            DAT+DFED+GHS SAR MMD+  +GDID ST+P K +Y PP+QP YNQDKTP+F                A  +R Y K+
Sbjct:   53 DATDDFEDIGHSSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQFLVPLIILGVAVGIRFYKKQ 132          
BLAST of BQ623458 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 DATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXXAFAVRHYTK 237
            DAT+DFED+GHS SA+ M+D+YY+GDID S++P +  Y PP+QP YN DKT EF                A  +R YTK
Sbjct:   51 DATDDFEDIGHSSSAKAMLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVILAGAIGIRFYTK 129          
The following BLAST results are available for this feature:
BLAST of BQ623458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CYB51_ARATH6.818e-2462.96Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB5.772e-2362.96Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5_ORYSJ7.055e-2156.79Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB52_ARATH5.973e-2055.70Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_TOBAC1.331e-1955.00Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5S_TOBAC2.964e-1955.00Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB5_CUSRE9.536e-1851.25Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB5_BOROF6.181e-1749.37Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00549 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00549 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623458 ID=BQ623458; Name=BQ623458; organism=Citrus sinensis; type=EST; length=488bp
GATGCAACAAATGACTTTGAAGATGTGGGTCACAGTGACTCCGCTAGGGA
GATGATGGACAAGTACTATATTGGTGACATTGATCCCTCAACTGTTCCTC
GGAAACGTGCATATATTCCACCGCAGCAACCTGCTTACAATCAAGACAAG
ACCCCTGAGTTCATTATTAAGATTCTACAGATTCTTGTGCCGCTCTTGAT
ATTGGGTTTAGCCTTTGCGGTCAGACACTATACCAAGAAAGAGTAGGTCA
CAATATCAATAAAATGAGTCATCTCCGGAATGGGAAGCTGGTGATTTGCA
TGAGCTTAGTTCTAGGACATTTATCTTTTATTTACTTTCCTATGGTGGTT
TGGTTTTGCTGAAATTGAATAGTGGTTCGTAGTCCACCAGAGACCATATT
GGCTGTCTTCTCTTGAGTGTCTTGTTTCTAATGTTTTTCATTGATGGTCA
TGGGATAATGTTTACTTTTATTGGATCCTTGGATGGAA
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