BQ623478

Overview
NameBQ623478
Unique NameBQ623478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12466 contig Csv1_Contig12466:1040..1554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623478 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.285e-59
Identity = 93/121 (76.86%), Postives = 101/121 (83.47%), Query Frame = 3
Query:    3 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 365
            KGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVRKW          K LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FYG
Sbjct:  317 KGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437          

HSP 2 Score: 61.2326 bits (147), Expect = 2.285e-59
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1
Query:  400 GGKAAQQM-NVSVPEGCTDPTAENFDPPAKSDDGSCQY 510
            GG+AAQQ+ NV VPEGCTDP A N+DP A+SDDGSC Y
Sbjct:  437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of BQ623478 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 7.821e-57
Identity = 87/121 (71.90%), Postives = 103/121 (85.12%), Query Frame = 3
Query:    3 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 365
            KGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW          K LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG
Sbjct:  308 KGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428          

HSP 2 Score: 59.6918 bits (143), Expect = 7.821e-57
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1
Query:  403 GKAAQQM-NVSVPEGCTDPTAENFDPPAKSDDGSCQYT 513
            G+ AQQ  N+ VPEGCTDP A+NFDP A+SDDGSC YT
Sbjct:  428 GQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of BQ623478 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 8.508e-56
Identity = 84/121 (69.42%), Postives = 104/121 (85.95%), Query Frame = 3
Query:    3 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 365
            KGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW          K LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYG
Sbjct:  307 KGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427          

HSP 2 Score: 58.5362 bits (140), Expect = 8.508e-56
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1
Query:  403 GKAAQQMNVSVPEGCTDPTAENFDPPAKSDDGSCQYT 513
            GK AQQ  + VPEGCTD  A+N+DP A+SDDGSC YT
Sbjct:  427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of BQ623478 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 3.203e-55
Identity = 85/121 (70.25%), Postives = 94/121 (77.69%), Query Frame = 3
Query:    3 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 365
            KGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK+          K LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+AN DAI  G FYG
Sbjct:  317 KGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437          

HSP 2 Score: 65.0846 bits (157), Expect = 3.203e-55
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1
Query:  403 GKAAQQMNVSVPEGCTDPTAENFDPPAKSDDGSCQY 510
            GK AQQ+N+ VPEGCTDP AENFDP A+SDDG+C Y
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of BQ623478 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 8.389e-53
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 3
Query:    6 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 365
            GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVRKW          K LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN+DAI  G F+G
Sbjct:  316 GIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435          

HSP 2 Score: 58.9214 bits (141), Expect = 8.389e-53
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1
Query:  403 GKAAQQMNVSVPEGCTDPTAENFDPPAKSDDGSCQY 510
            GKAAQQ+++ V +GCTDP A+N+DP A+SDDGSC Y
Sbjct:  435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470          
BLAST of BQ623478 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 5.361e-49
Identity = 95/120 (79.17%), Postives = 103/120 (85.83%), Query Frame = 3
Query:    6 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 365
            GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN DA+ +G FYG
Sbjct:  318 GIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of BQ623478 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 8.560e-47
Identity = 89/121 (73.55%), Postives = 104/121 (85.95%), Query Frame = 3
Query:    3 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 365
            KGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN+DA+++G FYG
Sbjct:  304 KGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424          
BLAST of BQ623478 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.907e-46
Identity = 89/120 (74.17%), Postives = 102/120 (85.00%), Query Frame = 3
Query:    3 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 362
            KGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG ANEDAI+SG+F+
Sbjct:  319 KGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of BQ623478 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.246e-46
Identity = 88/119 (73.95%), Postives = 101/119 (84.87%), Query Frame = 3
Query:    3 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 359
            KGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN+DAI+ G F
Sbjct:  317 KGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of BQ623478 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 3.044e-44
Identity = 85/120 (70.83%), Postives = 102/120 (85.00%), Query Frame = 3
Query:    3 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 362
            KGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W          + LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEANEDA+++G+F+
Sbjct:  313 KGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
The following BLAST results are available for this feature:
BLAST of BQ623478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR2.285e-5976.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ7.821e-5771.90Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU8.508e-5669.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH3.203e-5570.25Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL8.389e-5367.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO5.361e-4979.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU8.560e-4773.55Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.907e-4674.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR7.246e-4673.95Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE3.044e-4470.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00569 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00569 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623478 ID=BQ623478; Name=BQ623478; organism=Citrus sinensis; type=EST; length=515bp
GCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAAG
CTTGTCGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAG
GGCCAGAGTCTATGATGATGAGGTGAGGAAGTGGATCTCTGGTGTTGGTG
TTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACA
TTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTCGAGTACGGAAACAT
GATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAGT
ATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGAAGATGCTATTCAGAGT
GGAAATTTCTATGGTTAGCCCCCTTGATCCTAGCTAAGAGGCCTTGATGG
GAGGCAAAGCAGCCCAGCAAATGAATGTTTCAGTTCCTGAAGGATGTACT
GATCCTACTGCAGAAAACTTTGATCCACCTGCAAAAAGTGATGATGGAAG
CTGCCAATACACGCT
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