BQ623483

Overview
NameBQ623483
Unique NameBQ623483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig416 contig Csv1_Contig416:40..642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623483 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.030e-42
Identity = 88/155 (56.77%), Postives = 106/155 (68.39%), Query Frame = 2
Query:   74 METERKKQE---LRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHY 529
            METE+K  +   L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP              S KFDEHAPP+AK+V +Q H LI  A++KAQ  V EA+TGGP+AA +YAA E K  ++TNSVK W KLN Y
Sbjct:    1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQY 155          

HSP 2 Score: 24.6386 bits (52), Expect = 5.030e-42
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  535 VPTMEDMAVPTAAQWSKKYNHL 600
            +  M D A+P AA +S +YN L
Sbjct:  158 IHAMGDKALPVAAHFSSRYNDL 179          
BLAST of BQ623483 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.199e-21
Identity = 57/167 (34.13%), Postives = 82/167 (49.10%), Query Frame = 2
Query:   89 KKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVH------YAAAESKHLLLTN---------SVKAWYKLNHYALFPQ 544
            +++ L++L F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP             +  + + H P L KR + Q  ++ + A + A  +  E Q  G            Y+  E     L +         +V AW  LN   LFPQ
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQ 182          

HSP 2 Score: 30.0314 bits (66), Expect = 2.199e-21
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  526 LCIVPTMEDMAVPTAAQWSKKYN 594
            L + P +  + VPTAA WS+KYN
Sbjct:  177 LPLFPQVAQVVVPTAAYWSEKYN 199          
BLAST of BQ623483 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.846e-18
Identity = 57/172 (33.14%), Postives = 84/172 (48.84%), Query Frame = 2
Query:   80 TERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGG-----------------PRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFPQ 544
            T+ +K+ L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K+  VP             +  + D   PP+ K+V++Q  S  + A   A+ L  E +  G                 P A   YA  E K      +V AW KLN   LFP+
Sbjct:   15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPR 184          

HSP 2 Score: 26.1794 bits (56), Expect = 5.846e-18
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  526 LCIVPTMEDMAVPTAAQWSKKYN 594
            L + P +  +AVPTAA  S+KYN
Sbjct:  179 LPLFPRLAQVAVPTAAFCSEKYN 201          
BLAST of BQ623483 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.054e-16
Identity = 56/169 (33.14%), Postives = 85/169 (50.30%), Query Frame = 2
Query:   62 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFP 541
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L P
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVP 185          

HSP 2 Score: 21.557 bits (44), Expect = 5.054e-16
Identity = 9/23 (39.13%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  526 LCIVPTMEDMAVPTAAQWSKKYN 594
            L +VP++    +P AA  S +YN
Sbjct:  181 LPLVPSVTRAVLPAAASLSARYN 203          
BLAST of BQ623483 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.054e-16
Identity = 56/169 (33.14%), Postives = 85/169 (50.30%), Query Frame = 2
Query:   62 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFP 541
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L P
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVP 185          

HSP 2 Score: 21.557 bits (44), Expect = 5.054e-16
Identity = 9/23 (39.13%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  526 LCIVPTMEDMAVPTAAQWSKKYN 594
            L +VP++    +P AA  S +YN
Sbjct:  181 LPLVPSVTRAVLPAAASLSARYN 203          
BLAST of BQ623483 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.964e-13
Identity = 45/159 (28.30%), Postives = 72/159 (45.28%), Query Frame = 2
Query:   92 KQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPR--------AAVHYAAAESKHLLLTNSVKAWYKLNHYALFPQ 544
            + +L+HL F+++AA+    C S+LY+ AK N+GPL+  V  +E  V  V+ P+Y+KF  VP                  + + P L K+ +SQ    +  A++  +  V++      R        AA +YAA              W  LN   LFP+
Sbjct:   38 EMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQA---LTVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAAT------------LWRLLNQLPLFPE 181          

HSP 2 Score: 27.335 bits (59), Expect = 5.964e-13
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  526 LCIVPTMEDMAVPTAAQWSKKYN 594
            L + P +  + +PTA  WS+KYN
Sbjct:  176 LPLFPEVAHLVIPTAFYWSEKYN 198          
BLAST of BQ623483 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.741e-12
Identity = 45/157 (28.66%), Postives = 71/157 (45.22%), Query Frame = 2
Query:   74 METERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFPQ 544
            M  E +++ L++L F+R A + A+   S+LY YAK  SGPL+  V T+E+ V  VV PVY     +P             +    D   PP+ K+V++Q +S+ + A +    +       G +       A  +      +V  W  LN   L PQ
Sbjct:    1 MAEEVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQ 153          

HSP 2 Score: 26.9498 bits (58), Expect = 3.741e-12
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  526 LCIVPTMEDMAVPTAAQWSKKYN 594
            L +VP + ++ VPTA  +S+KYN
Sbjct:  148 LPLVPQVANVVVPTAVYFSEKYN 170          
The following BLAST results are available for this feature:
BLAST of BQ623483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y1736_ARATH5.030e-4256.77REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI2.199e-2134.13Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y3550_ARATH5.846e-1833.14REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
Y5513_ORYSJ5.054e-1633.14REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI5.054e-1633.14REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
Y2778_ARATH5.964e-1328.30REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
SRPP_HEVBR3.741e-1228.66Small rubber particle protein OS=Hevea brasiliensi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00574 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00574 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623483 ID=BQ623483; Name=BQ623483; organism=Citrus sinensis; type=EST; length=602bp
AATCAATAGCAAGCTAATTTCTCGCGAGATCTAAAAGCAATATCGAATAA
TTCATCTTTTGCGCAGTGAAGATATGGAGACTGAGAGGAAGAAACAGGAA
CTGAGGCATCTTGGATTTATGAGGATAGCCGCGATTAAGGCTCTGGTGTG
CGTGTCGAGTTTGTACGACTACGCAAAACGCAACTCGGGGCCGCTACGCT
CGCCGGTTGGGACTGTCGAAAGCGCCGTGACTGCCGTCGTGGGACCTGTT
TATCAGAAATTCAAGGGCGTGCCTGATGATCTCCTCGTTTTTCTTGATAA
GAAGGTGGATGATGCTTCACGCAAGTTTGACGAGCACGCTCCCCCTTTGG
CCAAGCGGGTTGCCAGCCAAGTACATAGTCTAATTGAAACAGCATCACAG
AAAGCTCAAAAGCTTGTGATTGAGGCCCAAACCGGGGGGCCTCGAGCAGC
TGTCCATTATGCTGCTGCTGAGTCTAAACACCTTCTGCTAACAAATTCCG
TGAAAGCATGGTATAAACTAAACCACTATGCATTGTTCCCACAATGGAAG
ATATGGCTGTTCCCACAGCTGCACAGTGGTCCAAGAAATATAACCATCTT
GT
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