BQ623484

Overview
NameBQ623484
Unique NameBQ623484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623484 vs. ExPASy Swiss-Prot
Match: COX17_DICDI (Cytochrome c oxidase copper chaperone OS=Dictyostelium discoideum GN=cox17 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.906e-15
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 2
Query:  116 TKSGTE-SKPKKKICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 277
            T + TE + PKKK+CCACPETKK+RDECIV +GEE CA  IE H+ CLR EGF+V
Sbjct:    6 TNTTTEVAAPKKKMCCACPETKKVRDECIVANGEEKCAALIELHKVCLRKEGFDV 60          
BLAST of BQ623484 vs. ExPASy Swiss-Prot
Match: COX17_CANFA (Cytochrome c oxidase copper chaperone OS=Canis familiaris GN=COX17 PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 2
Query:  122 SGTESKPKKKICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 277
            S ++ K   K CCACPETKK RD CI+E GEE C   IEAH++C+RA GF +
Sbjct:   12 SDSQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63          
BLAST of BQ623484 vs. ExPASy Swiss-Prot
Match: COX17_PIG (Cytochrome c oxidase copper chaperone OS=Sus scrofa GN=COX17 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 2
Query:  131 ESKPKK--KICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 277
            ES+ KK  K CCACPETKK RD CI+E GEE C   IEAH++C+RA GF +
Sbjct:   12 ESQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 62          
BLAST of BQ623484 vs. ExPASy Swiss-Prot
Match: COX17_HUMAN (Cytochrome c oxidase copper chaperone OS=Homo sapiens GN=COX17 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 2
Query:  131 ESKPKK--KICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 277
            ES+ KK  K CCACPETKK RD CI+E GEE C   IEAH++C+RA GF +
Sbjct:   13 ESQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63          
BLAST of BQ623484 vs. ExPASy Swiss-Prot
Match: COX17_MOUSE (Cytochrome c oxidase copper chaperone OS=Mus musculus GN=Cox17 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 2
Query:  131 ESKPKKKICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 277
            E KP K  CCACPETKK RD CI+E GEE C   IEAH++C+RA GF +
Sbjct:   16 EKKPLKP-CCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63          
The following BLAST results are available for this feature:
BLAST of BQ623484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
COX17_DICDI2.906e-1567.27Cytochrome c oxidase copper chaperone OS=Dictyoste... [more]
COX17_CANFA2.303e-1257.69Cytochrome c oxidase copper chaperone OS=Canis fam... [more]
COX17_PIG3.008e-1262.75Cytochrome c oxidase copper chaperone OS=Sus scrof... [more]
COX17_HUMAN3.008e-1262.75Cytochrome c oxidase copper chaperone OS=Homo sapi... [more]
COX17_MOUSE3.928e-1263.27Cytochrome c oxidase copper chaperone OS=Mus muscu... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00575 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00575 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623484 ID=BQ623484; Name=BQ623484; organism=Citrus sinensis; type=EST; length=421bp
CATTTCGGCATCTTGAATTCTTGAAAGATTTGTGACGATGGGTGGACTGC
CTCTGCAAGATGCTTCCTCTACCTTGGCTTTGCCGGGATCACAGCCGAAC
CAAGGCTTGGAAGTCACAAAATCTGGTACGGAGTCAAAACCAAAGAAGAA
GATCTGCTGTGCTTGCCCCGAGACTAAGAAGCTGAGAGATGAATGTATAG
TGGAACACGGTGAAGAGGCATGTGCAAAATGGATTGAGGCTCATCGTAAG
TGCCTCCGTGCCGAGGGCTTTAATGTTTGAGATTGTTGGAGATAGTTGAG
TTCATGATTGCAACCCACTTGGGCATACTGACATTAAATTTTCAAATTAG
CAAACCACAGGTGATTTAAACTTAAAGAGGAATAAAGCCAGGAAGAACAT
ATTTACTTGGCTTTTGATTGC
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