BQ623494

Overview
NameBQ623494
Unique NameBQ623494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9128 contig Csv1_Contig9128:544..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_ARATH (V-type proton ATPase subunit D OS=Arabidopsis thaliana GN=VHA-D PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 8.942e-65
Identity = 74/98 (75.51%), Postives = 89/98 (90.82%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            G++MK SSFAL E KYVAG+N+KH+VLENV+ A++KVRSR ENIAGVK+PKF++F++GETKNDLTGLARGGQQV+ CR AYVKAIE+LVELASLQ  F
Sbjct:   60 GDMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETKNDLTGLARGGQQVRACRVAYVKAIEVLVELASLQTSF 157          

HSP 2 Score: 98.2117 bits (243), Expect = 8.942e-65
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 3
Query:  141 QNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMG 311
            QN RL VVPTVTMLGVMK+RLVGATRGHALLKKKSDALTVQFR +LK IVT KESMG
Sbjct:    4 QNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60          

HSP 3 Score: 36.1946 bits (82), Expect = 8.942e-65
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            TSFLTLDEAIKTTNRRV
Sbjct:  155 TSFLTLDEAIKTTNRRV 171          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_SUBDO (V-type proton ATPase subunit D OS=Suberites domuncula GN=VATPD PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.105e-37
Identity = 50/98 (51.02%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            GEVMK+++F+L EAK+VAG+    +VL+NV  A I++ ++++N+AGV +P FE ++DG    +LTGL+RGGQ V +C+  + KA+ LLVELASLQ  F
Sbjct:   59 GEVMKEATFSLAEAKFVAGD-FSEMVLQNVDKAKIRLHTKKDNVAGVTLPVFETYSDGSDTYELTGLSRGGQLVSKCKEVFGKAVRLLVELASLQTAF 155          

HSP 2 Score: 63.1586 bits (152), Expect = 1.105e-37
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 3
Query:  135 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMG 311
            M+   R+ V P+   L +MK+RL GA +GH+LLK+K+DALT++FRQIL  I+ TK  MG
Sbjct:    1 MSGKDRINVFPSRMALTLMKARLKGAQKGHSLLKRKADALTLRFRQILGKIIETKTLMG 59          

HSP 3 Score: 30.4166 bits (67), Expect = 1.105e-37
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            T+F+TLDE IK TNRRV
Sbjct:  153 TAFVTLDEVIKVTNRRV 169          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_PONAB (V-type proton ATPase subunit D OS=Pongo abelii GN=ATP6V1D PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.329e-37
Identity = 48/98 (48.98%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            GEVM++++F+L EAK+ AG+     V++NV  A +K+R++++N+AGV +P FE++ +G    +LTGLARGG+Q+ + +  Y KA+ELLVELASLQ  F
Sbjct:   59 GEVMREAAFSLAEAKFTAGD-FSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSF 155          

HSP 2 Score: 60.077 bits (144), Expect = 5.329e-37
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  135 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMG 311
            M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MG
Sbjct:    1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMG 59          

HSP 3 Score: 32.7278 bits (73), Expect = 5.329e-37
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            TSF+TLDEAIK TNRRV
Sbjct:  153 TSFVTLDEAIKITNRRV 169          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_MOUSE (V-type proton ATPase subunit D OS=Mus musculus GN=Atp6v1d PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.329e-37
Identity = 48/98 (48.98%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            GEVM++++F+L EAK+ AG+     V++NV  A +K+R++++N+AGV +P FE++ +G    +LTGLARGG+Q+ + +  Y KA+ELLVELASLQ  F
Sbjct:   59 GEVMREAAFSLAEAKFTAGD-FSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSF 155          

HSP 2 Score: 60.077 bits (144), Expect = 5.329e-37
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  135 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMG 311
            M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MG
Sbjct:    1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMG 59          

HSP 3 Score: 32.7278 bits (73), Expect = 5.329e-37
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            TSF+TLDEAIK TNRRV
Sbjct:  153 TSFVTLDEAIKITNRRV 169          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_HUMAN (V-type proton ATPase subunit D OS=Homo sapiens GN=ATP6V1D PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.329e-37
Identity = 48/98 (48.98%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            GEVM++++F+L EAK+ AG+     V++NV  A +K+R++++N+AGV +P FE++ +G    +LTGLARGG+Q+ + +  Y KA+ELLVELASLQ  F
Sbjct:   59 GEVMREAAFSLAEAKFTAGD-FSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSF 155          

HSP 2 Score: 60.077 bits (144), Expect = 5.329e-37
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  135 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMG 311
            M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MG
Sbjct:    1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMG 59          

HSP 3 Score: 32.7278 bits (73), Expect = 5.329e-37
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            TSF+TLDEAIK TNRRV
Sbjct:  153 TSFVTLDEAIKITNRRV 169          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_BOVIN (V-type proton ATPase subunit D OS=Bos taurus GN=ATP6V1D PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.329e-37
Identity = 48/98 (48.98%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            GEVM++++F+L EAK+ AG+     V++NV  A +K+R++++N+AGV +P FE++ +G    +LTGLARGG+Q+ + +  Y KA+ELLVELASLQ  F
Sbjct:   59 GEVMREAAFSLAEAKFTAGD-FSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSF 155          

HSP 2 Score: 60.077 bits (144), Expect = 5.329e-37
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  135 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMG 311
            M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MG
Sbjct:    1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMG 59          

HSP 3 Score: 32.7278 bits (73), Expect = 5.329e-37
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            TSF+TLDEAIK TNRRV
Sbjct:  153 TSFVTLDEAIKITNRRV 169          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_RABIT (V-type proton ATPase subunit D OS=Oryctolagus cuniculus GN=ATP6V1D PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.520e-36
Identity = 47/98 (47.96%), Postives = 73/98 (74.49%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            GEVM++++F+L EAK+ AG+      ++NV  A +K+R++++N+AGV +P FE++ +G    +LTGLARGG+Q+ + +  Y KA+ELLVELASLQ  F
Sbjct:   59 GEVMREAAFSLAEAKFTAGD-FSTTAIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSF 155          

HSP 2 Score: 60.077 bits (144), Expect = 1.520e-36
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  135 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMG 311
            M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MG
Sbjct:    1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMG 59          

HSP 3 Score: 32.7278 bits (73), Expect = 1.520e-36
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            TSF+TLDEAIK TNRRV
Sbjct:  153 TSFVTLDEAIKITNRRV 169          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD2_DROME (Probable V-type proton ATPase subunit D 2 OS=Drosophila melanogaster GN=CG8310 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 5.635e-36
Identity = 49/98 (50.00%), Postives = 71/98 (72.45%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            G+VMK+++F+L E K+  G+ I  IVL+NV  A IK+R++++N+AGV +P FE +TDG    +L GLARGGQQ+ + +  Y  A+ LLV+LASLQ  F
Sbjct:   59 GQVMKEAAFSLAEVKFTTGD-INQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTYELAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSF 155          

HSP 2 Score: 62.3882 bits (150), Expect = 5.635e-36
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  135 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGR 314
            MA   RL + P+     +MKSRL GAT+GH LLKKK+DAL ++FR IL  I+ TK  MG+
Sbjct:    1 MAAKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQ 60          

HSP 3 Score: 30.4166 bits (67), Expect = 5.635e-36
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            TSF+TLD+ IK TNRRV
Sbjct:  153 TSFVTLDDVIKVTNRRV 169          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_MANSE (V-type proton ATPase subunit D OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.715e-35
Identity = 49/98 (50.00%), Postives = 71/98 (72.45%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            GEVMK+++F+L EAK+  G+    +VL+NV  A IK+RS+++N+AGV +P FE + DG    +L GLARGGQQ+ + +  +  A++LLVELASLQ  F
Sbjct:   59 GEVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSF 155          

HSP 2 Score: 58.5362 bits (140), Expect = 2.715e-35
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 3
Query:  135 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMG 311
            M+   RL + P+     +MK RL GA +GH LLKKK+DAL V+FR IL  I+ TK  MG
Sbjct:    1 MSGKDRLAIFPSRGAQMLMKGRLAGAQKGHGLLKKKADALQVRFRLILSKIIETKTLMG 59          

HSP 3 Score: 31.187 bits (69), Expect = 2.715e-35
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            TSF+TLDE IK TNRRV
Sbjct:  153 TSFVTLDEVIKITNRRV 169          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD1_DROME (V-type proton ATPase subunit D 1 OS=Drosophila melanogaster GN=Vha36 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.528e-35
Identity = 49/98 (50.00%), Postives = 73/98 (74.49%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            G+VMK+++F+L EAK+ +G+ I  +VL+NV  A IK+R++++N+AGV +P FE + DG    +L GLARGGQQ+ + +  Y  A++LLVELASLQ  F
Sbjct:   59 GDVMKEAAFSLAEAKFTSGD-INQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGSDTYELAGLARGGQQLAKLKKNYQSAVKLLVELASLQTSF 155          

HSP 2 Score: 56.6102 bits (135), Expect = 3.528e-35
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 3
Query:  135 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMG 311
            M+   RL + P+     +MK+RL GA +GH LLKKK+DAL ++FR IL  I+ TK  MG
Sbjct:    1 MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGKIIETKTLMG 59          

HSP 3 Score: 31.187 bits (69), Expect = 3.528e-35
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            TSF+TLDE IK TNRRV
Sbjct:  153 TSFVTLDEVIKITNRRV 169          
The following BLAST results are available for this feature:
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
VATD_ARATH8.942e-6575.51V-type proton ATPase subunit D OS=Arabidopsis thal... [more]
VATD_SUBDO1.105e-3751.02V-type proton ATPase subunit D OS=Suberites domunc... [more]
VATD_PONAB5.329e-3748.98V-type proton ATPase subunit D OS=Pongo abelii GN=... [more]
VATD_MOUSE5.329e-3748.98V-type proton ATPase subunit D OS=Mus musculus GN=... [more]
VATD_HUMAN5.329e-3748.98V-type proton ATPase subunit D OS=Homo sapiens GN=... [more]
VATD_BOVIN5.329e-3748.98V-type proton ATPase subunit D OS=Bos taurus GN=AT... [more]
VATD_RABIT1.520e-3647.96V-type proton ATPase subunit D OS=Oryctolagus cuni... [more]
VATD2_DROME5.635e-3650.00Probable V-type proton ATPase subunit D 2 OS=Droso... [more]
VATD_MANSE2.715e-3550.00V-type proton ATPase subunit D OS=Manduca sexta PE... [more]
VATD1_DROME3.528e-3550.00V-type proton ATPase subunit D 1 OS=Drosophila mel... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00585 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00585 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623494 ID=BQ623494; Name=BQ623494; organism=Citrus sinensis; type=EST; length=677bp
TTTCTCGCTAATTTTCTCTGGAGCCAAATTCGATCTTTCACTTAAACCGG
AGTTAGGGTTCCATTTGATCTCATCGGATCGGCCTTTCGCGGAATCTTAA
ACTCCCTAATATTTGGATCAGATAATTTGGAAAGATGGCGCAAAACCAGC
GGTTGACTGTGGTTCCCACAGTGACAATGCTAGGGGTTATGAAAAGTAGG
CTTGTTGGTGCTACAAGAGGGCATGCCCTTTTGAAGAAGAAGAGTGATGC
TTTAACTGTTCAGTTTCGTCAGATCCTTAAGAATATCGTGACTACGAAGG
AATCGATGGGGAGAAGTTATGAAAGATTCTTCCTTTGCCCTGATTGAGGC
CAAGTATGTTGCTGGCGAAAACATCAAGCACATTGTTCTTGAGAATGTGC
AAAATGCTTCTATTAAAGTTCGATCCCGTCAAGAGAATATTGCAGGTGTT
AAGATTCCAAAGTTTGAGTACTTCACTGATGGCGAGACCAAGAATGATCT
TACAGGATTGGCTAGAGGTGGGCAACAAGTGCAACAGTGTCGTGCTGCTT
ATGTGAAAGCCATTGAGCTTCTTGTCGAGCTTGCTTCTCTTCAACTTCGT
TTTTGACGCTGGATGAGGCGATTAAGACCACAAACCGCAGGGTTATGCTT
TGGAGAATGTAGTCAGCCTAGATTGGA
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