BQ623501

Overview
NameBQ623501
Unique NameBQ623501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12683 contig Csv1_Contig12683:458..1149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL4_ARATH (Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35
Identity = 86/214 (40.19%), Postives = 128/214 (59.81%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEGGK----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEK 636
            PG+LR      +PLWI F     I L+S L ++SYKTIDGRG +V++  G  LR+++ +HVII  +     K    G D D I++  +S H+WID C L    DGLID+   ST +T+S  +F+ HDK ML+G D S++ D+ +RVTI  + F  G  +R PRVR    H+ NN    W +YA+  S +  I+S+ N + A +K+ + K +T++
Sbjct:   89 PGTLRYAVSQPKPLWITFARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGMDGDGIRVF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDMRVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEKRSS-KQVTKR 300          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.822e-34
Identity = 91/225 (40.44%), Postives = 124/225 (55.11%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG-LRLKECEHVIICNLE---------FEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEE 654
            PG+LR G   +EPLWIVF  +  I L+  L ++SYKT+DGRG  V +TG G L L+  +H+II NL          FE     D D I I    K IW+D CS+    DGLID    ST IT+S  +F+ HD+ ML+G D ++  D  ++VTI  + F  G  QR PR R   +H+ NN    W +YA+  S +  I SQ N Y A     A K +T++   K++
Sbjct:  134 PGTLRYGVIQEEPLWIVFSSNMLIRLKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGRSDGDGISIFGSQK-IWVDHCSMSHCTDGLIDAVMGSTAITISNNYFTHHDEVMLLGHDDNYAPDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRYSAPSDPSA-KEVTKRVDSKDD 356          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34
Identity = 85/228 (37.28%), Postives = 124/228 (54.39%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEG------------GKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFF-DGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEE 654
            PG+LR      +PLWI+F+    I L+  L V+SYKTIDGRG  V++  G  L L +  ++II NL                G   D D I I  +S+ IWID C+L    DGLID    STDIT+S  +  +H++ ML+G    +  DR +RVTI   +F +G  QR PR R+   H+ NN  R+W +YA+  S +  I+SQ N++ A   +   +    +++D +E
Sbjct:  103 PGTLRYAATQDQPLWIIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDCVPVKRNALSSLGGYSDGDGISIF-ESRDIWIDHCTLEKCYDGLIDAVNGSTDITISNSYMLNHNEVMLLGHSDEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYRDWKMYAIGGSANPTIFSQGNVFIASNNQFTKEVTKRESADGDE 329          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.997e-33
Identity = 89/244 (36.48%), Postives = 128/244 (52.46%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEGGK---------GP---------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARSGCIRAEG 684
            PG+LR     +EPLWI+F+    I L+  L ++S+KTIDGRG  V +T G  L++    ++II  +     K         GP         D DA+ I    KH+WID CSL + DDGLID    ST IT+S  H + HDK ML+G   S+  D+ ++VTI  + F +G  QR PR R+   H+ NN   +W +YA+  S    IYSQ N + A   +   +    + + + + R    R+EG
Sbjct:  115 PGTLRYAVTQEEPLWIIFKRDMVIRLKKELIITSFKTIDGRGSSVHITDGPCLKIHYATNIIIHGINIHDCKPGSGGMIKDGPHHTGWWMQSDGDAVAIFG-GKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRDWNWRSEG 357          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL2_ARATH (Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.962e-32
Identity = 86/233 (36.91%), Postives = 123/233 (52.79%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFE------------------GGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG-----QKKMAFKYLTEK 636
            PG+LR      +PLWI F     I LR+ L ++SYKTIDGRG +V++  G  + ++   HVII  +                       KG D DAI I   S HIWID C      DGLID+   ST +T+S  +F+ HDK ML+G + ++V D+ +RVTI  + F  G  +R PRVR    H+ NN    W +YA+  S D  I+S+ N + A      ++  +FK +T++
Sbjct:   90 PGTLRYAVIQSKPLWITFARDMVIVLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPTHVGSRKGSDGDAIAIFDSS-HIWIDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADPTIFSEGNYFVASDDPSKKQVSSFKIVTKR 321          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: MPA12_AMBAR (Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.357e-31
Identity = 86/240 (35.83%), Postives = 118/240 (49.17%), Query Frame = 1
Query:    1 ADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK-----------GP-------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARS 663
            A+   G+LR       PLWI+F+ +  IHL   L V+S KTIDGRG +V +   GL L   +++II N+     K           GP       D DAI +   S+ IWID CSL    DGL+DIT  S+ +TVS C F+ H   +L+GAD +H  D+ +  T+  + F D   QR PR R+    + NN    WG YA+  S    I SQ N + A    +    L    +   E+ S
Sbjct:  100 ANPKEGTLRFAAAQNRPLWIIFKRNMVIHLNQELVVNSDKTIDGRGVKVNIVNAGLTLMNVKNIIIHNINIHDIKVCPGGMIKSNDGPPILRQQSDGDAINVAGSSQ-IWIDHCSLSKASDGLLDITLGSSHVTVSNCKFTQHQFVLLLGADDTHYQDKGMLATVAFNMFTDHVDQRMPRCRFGFFQVVNNNYDRWGTYAIGGSSAPTILSQGNRFFAPDDIIKKNVLARTGTGNAESMS 338          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL_TOBAC (Pectate lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.596e-30
Identity = 87/219 (39.73%), Postives = 117/219 (53.42%), Query Frame = 1
Query:    4 DDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKL-TGKGLRLKECEHVIICNLEFE-----------------GGKGPDV-DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTR--QRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEA 597
            D  PG+LR G   KEPLWI+F  +  I L   L V+S KTIDGRG  V +  G G++++   ++II NL                    G +G D  D I I   S  IWID  S+    DGLID    ST+IT+S CHF+ H+K ML GA+  +V D+ +++T+ +  F G R  QR PR R+   HL NN   +W  YA+  S  + I SQ N + A
Sbjct:   97 DPKPGTLRYGVIQKEPLWIIFGKNMKIKLSRELIVTSNKTIDGRGFNVHIQNGAGIKIQSASNIIISNLRIHNIVPTPGGLLRESEDHVGLRGSDEGDGISIF-SSHDIWIDHISMSRATDGLIDAVAASTNITISNCHFTDHEKVMLFGANDHYVLDKDMKITLAYNHF-GKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSSGATIISQGNRFIA 313          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL56_SOLLC (Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.596e-30
Identity = 96/240 (40.00%), Postives = 126/240 (52.50%), Query Frame = 1
Query:    4 DDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFE-----------------GGKGPDV-DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTR--QRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLT--EKASDKEE 654
            D  PG+LR G   K PLWI F  S  I L   L VSS KTIDGRG+ V +  G G++++   +VII NL                    G +G D  DAI I   S  IWID  S+    DGLID    ST+IT+S CHF+ H+K ML GA+     DR +++T+ +  F G R  QR PR R+   HL NN   +W  YA+  S  + I SQ N + A + K+  K +T  EK++   E
Sbjct:   98 DPKPGTLRFGVIQKGPLWITFARSMRIRLTRELIVSSNKTIDGRGKYVHIANGAGIKIQSASNVIISNLRIHNIVPTAGGLLRESDDHLGLRGADEGDAISIF-NSHDIWIDHISMSRATDGLIDAVAGSTNITISNCHFTDHEKVMLFGANDHAEEDRGMKITLAYNHF-GKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSSGATIISQGNRFIA-EDKLLVKEVTYREKSTSSVE 334          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL16_ARATH (Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.722e-30
Identity = 87/238 (36.55%), Postives = 119/238 (50.00%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEG------------------GKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARSG 666
            PGSLR G    +PLWI F     I L + L V+SYKTIDGRG +V++  G  + +++  +VI+  +                       KG D DAI I   S +IWID C L    DGLID+   ST IT+S  +F+ HDK ML+G +   V D  ++VT+  + F  G  +R PRVR    H+ NN    W +YA+  S D  I+S+ N + A  K         K   K E + G
Sbjct:  100 PGSLRYGVIQAKPLWITFAKDMVITLENELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKYGMVRSSPTHVGHRKGSDGDAIAIFGSS-NIWIDHCYLASCTDGLIDVIHASTGITISNNYFTQHDKVMLLGHNDDFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIASDKS------NSKEVTKREVKGG 330          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL17_ARATH (Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.644e-30
Identity = 86/238 (36.13%), Postives = 121/238 (50.84%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEG------------------GKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARSG 666
            PGSLR G    +PLWI F     I L + L V+SYKTIDGRG +V++  G  + +++  +VI+  +                       KG D DAI I   S ++WID C L    DGLID+   ST IT+S  +F+ HDK ML+G + + V D  ++VT+  + F  G  +R PRVR    H+ NN    W +YA+  S D  I+S+ N + A  K  +      K   K E + G
Sbjct:  100 PGSLRYGVIQAKPLWITFAKDMVITLANELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKSGKVRSSPTHVGHRKGSDGDAITIFGSS-NVWIDHCYLASCTDGLIDVIHASTAITISNNYFTQHDKVMLLGHNDNFVKDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIASDKSYS------KEVTKREVKGG 330          
The following BLAST results are available for this feature:
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PEL4_ARATH1.648e-3540.19Probable pectate lyase 4 OS=Arabidopsis thaliana G... [more]
PEL13_ARATH1.822e-3440.44Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
PEL21_ARATH9.042e-3437.28Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL11_ARATH9.997e-3336.48Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL2_ARATH4.962e-3236.91Putative pectate lyase 2 OS=Arabidopsis thaliana G... [more]
MPA12_AMBAR9.357e-3135.83Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifol... [more]
PEL_TOBAC1.596e-3039.73Pectate lyase OS=Nicotiana tabacum PE=2 SV=1[more]
PEL56_SOLLC1.596e-3040.00Probable pectate lyase P56 OS=Solanum lycopersicum... [more]
PEL16_ARATH2.722e-3036.55Probable pectate lyase 16 OS=Arabidopsis thaliana ... [more]
PEL17_ARATH4.644e-3036.13Putative pectate lyase 17 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00592 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00592 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623501 ID=BQ623501; Name=BQ623501; organism=Citrus sinensis; type=EST; length=692bp
GCTGATGACGGGCCAGGATCACTTCGAGAAGGATGCCGCATGAAAGAACC
TCTTTGGATTGTCTTTGAAGTGTCAGGCACCATTCATCTCCGCTCTCACT
TGAGTGTCTCATCTTACAAAACCATAGATGGCCGAGGACAAAGGGTGAAA
CTTACAGGAAAGGGTTTGAGGCTGAAGGAATGCGAACATGTTATAATATG
CAATCTAGAGTTTGAAGGTGGTAAAGGACCTGATGTTGATGCCATTCAAA
TAAAACCTAAGTCAAAACACATATGGATAGACCGTTGTAGTCTCCGTGAT
TATGATGATGGGCTGATAGATATCACCAGAGAAAGCACAGATATTACAGT
TTCTAGGTGTCACTTTTCATCACATGACAAGACCATGCTCATTGGAGCAG
ATCCCTCTCATGTTGCTGATAGATGTATTCGAGTGACCATTCATCATTGT
TTTTTTGATGGGACTCGACAACGACATCCACGTGTTAGATATGCTAAAGT
ACATCTGTATAACAATTACACCAGAAATTGGGGAATTTATGCTGTTTGTG
CCAGTGTTGATTCACAGATATACTCCCAATGTAATATATATGAAGCAGGA
CAGAAGAAGATGGCATTCAAGTATCTTACAGAGAAGGCATCAGACAAGGA
GGAGGCAAGATCTGGTTGCATAAGGGCTGAAGGGGGATTTGT
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