BQ623504

Overview
NameBQ623504
Unique NameBQ623504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length339
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623504 vs. ExPASy Swiss-Prot
Match: PSAK_ARATH (Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 3.566e-36
Identity = 75/90 (83.33%), Postives = 80/90 (88.89%), Query Frame = 3
Query:    6 QPSQ*GGNAVEPLGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVG 275
            QP +  GN    LGA+C FIGS TNLIMVT+TTLMLFAGRFGLAPSANRKATAGL+LE RDSGLQTGDPAGFTLADTLACG+VGHIIGVG
Sbjct:   32 QPMRRKGNGA--LGAKCDFIGSSTNLIMVTSTTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGHIIGVG 119          

HSP 2 Score: 25.0238 bits (53), Expect = 3.566e-36
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  275 GVVLGLKNLGAL 310
            GVVLGLKN+GA+
Sbjct:  119 GVVLGLKNIGAI 130          
BLAST of BQ623504 vs. ExPASy Swiss-Prot
Match: PSAK_MEDSA (Photosystem I reaction center subunit psaK, chloroplastic OS=Medicago sativa GN=PSAK PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.815e-34
Identity = 74/86 (86.05%), Postives = 77/86 (89.53%), Query Frame = 3
Query:   42 LGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGGWSLALRT 299
            LG RC FIGS TN+IMV +TTLMLFAGRFGLAPSANRKATAGLKLE RDSGLQTGDPAGFTLADTLACG+VGHIIGV G  L LRT
Sbjct:   42 LGVRCDFIGSSTNVIMVASTTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLACGTVGHIIGV-GVVLGLRT 126          
BLAST of BQ623504 vs. ExPASy Swiss-Prot
Match: PSAK_HORVU (Photosystem I reaction center subunit psaK, chloroplastic OS=Hordeum vulgare GN=PSAK PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 7.056e-34
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 3
Query:   45 GARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVG 275
            G RC +IGS TNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLE R+SGLQTGDPAGFTLADTLACG+VGHI+GVG
Sbjct:   39 GIRCDYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVG 115          

HSP 2 Score: 22.7126 bits (47), Expect = 7.056e-34
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  275 GVVLGLKNLGAL 310
            G+VLGLKN G L
Sbjct:  115 GIVLGLKNTGVL 126          
BLAST of BQ623504 vs. ExPASy Swiss-Prot
Match: PSAK_CHLRE (Photosystem I reaction center subunit psaK, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAK PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.075e-16
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:   57 GFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKL--EVRDSGLQTGDPAGFTLADTLACGSVGHIIGVG 275
            GFIGS TNLIMV +TT  L A RFGLAP+  +  TAGLKL      +G+ + DPAGFT+ D LA G+ GH +GVG
Sbjct:   28 GFIGSSTNLIMVASTTATLAAARFGLAPTVKKNTTAGLKLVDSKNSAGVISNDPAGFTIVDVLAMGAAGHGLGVG 102          

HSP 2 Score: 23.0978 bits (48), Expect = 1.075e-16
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  275 GVVLGLKNLGAL 310
            G+VLGLK +GAL
Sbjct:  102 GIVLGLKGIGAL 113          
The following BLAST results are available for this feature:
BLAST of BQ623504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAK_ARATH3.566e-3683.33Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_MEDSA2.815e-3486.05Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_HORVU7.056e-3489.61Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_CHLRE1.075e-1657.33Photosystem I reaction center subunit psaK, chloro... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00595 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00595 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623504 ID=BQ623504; Name=BQ623504; organism=Citrus sinensis; type=EST; length=339bp
GGTAGCAGCCCAGCCAATGAGGAGGAAATGCAGTGGAGCCTTTGGGTGCT
CGTTGTGGCTTCATTGGTTCGCCCACAAATTTGATAATGGTGACAACAAC
AACCCTGATGCTATTTGCTGGGAGATTTGGGCTGGCTCCATCAGCAAACA
GGAAAGCAACGGCAGGATTGAAGCTTGAAGTGAGGGACTCTGGCTTGCAA
ACTGGTGACCCAGCTGGGTTCACTTTGGCTGACACATTGGCTTGTGGCAG
TGTTGGTCACATCATTGGTGTTGGGGGGTGGTCCTTGGCCTTAAGAACTT
GGGTGCTCTGTAAAAATTTTCGAAGCAGTTTGTTATGTT
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