BQ623506

Overview
NameBQ623506
Unique NameBQ623506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9255 contig Csv1_Contig9255:366..1045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 2.257e-66
Identity = 111/132 (84.09%), Postives = 125/132 (94.70%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G+  GGT AKDA+GND+IAA+WL TH PGDRTLT+GLKGDPTYLVVE DKTLA++GINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAH ++++GKVVFVPWTETDFRTGEAPWW+
Sbjct:   98 GAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWS 229          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.028e-66
Identity = 112/133 (84.21%), Postives = 123/133 (92.48%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 401
            G  GGGT AKDA+GND++AA+WL THGPGDRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYN QGRVVRGPAPLSLALAHA+I E GKV+FVPW ETDFRTG+APWW+
Sbjct:   97 GGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVLFVPWVETDFRTGDAPWWS 229          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.120e-65
Identity = 108/132 (81.82%), Postives = 122/132 (92.42%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G+AGGG  AKD +GND++A +WL THGP DRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQGRVVRGPAPLSLAL HA++++GKV+FVPW ETDFRTG+ PWWA
Sbjct:   94 GNAGGGQVAKDKLGNDVLAEEWLKTHGPNDRTLTQGLKGDPTYLVVEADKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGDNPWWA 225          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.495e-65
Identity = 111/132 (84.09%), Postives = 123/132 (93.18%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTGEAPWWA
Sbjct:   97 GGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEAPWWA 228          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.238e-64
Identity = 110/132 (83.33%), Postives = 122/132 (92.42%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTGE PWWA
Sbjct:   97 GGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEDPWWA 228          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.027e-64
Identity = 109/134 (81.34%), Postives = 121/134 (90.30%), Query Frame = 3
Query:    6 GSAGG--GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            GS GG  GT AKDA GND++  +WL TH PG RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQG+VVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTG++PWWA
Sbjct:   97 GSGGGSSGTIAKDANGNDVVVTEWLKTHSPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGDSPWWA 230          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.048e-63
Identity = 105/131 (80.15%), Postives = 117/131 (89.31%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 398
            GS  GG  AKD +GNDI+  DWL THGP DRTL +GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL HA++++GKVVFVPW ETDFRTG+ PWW
Sbjct:   91 GSNAGGVAAKDKLGNDILVEDWLKTHGPNDRTLAQGLKGDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVVFVPWVETDFRTGDNPWW 221          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.788e-63
Identity = 107/133 (80.45%), Postives = 119/133 (89.47%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 401
            G  GGG  AKDA+GNDI+AA WL THGPGDRTL +GL+GDPTYLVVE D++LA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL+H +I E GKVVFVPW ETDFRTGE PWW+
Sbjct:   98 GGGGGGIVAKDAVGNDIVAAAWLKTHGPGDRTLAQGLRGDPTYLVVENDRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDISEEGKVVFVPWVETDFRTGENPWWS 230          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.050e-63
Identity = 107/134 (79.85%), Postives = 123/134 (91.79%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHAN--IENGKVVFVPWTETDFRTGEAPWWA 401
            GS+ GGT AKDA+GND++A +WL TH PGDRTLT+GLKGDPTYLVVEKD+TLA++ INAVCTHLGCVVP+N AENKFICPCHGSQYN+QGRVVRGPAPLSLALAH +  +E+GKVVFVPW ETDFRTG+APWW+
Sbjct:   97 GSSTGGTVAKDAVGNDVVATEWLKTHAPGDRTLTQGLKGDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVETDFRTGDAPWWS 230          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_MICAN (Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis aeruginosa (strain NIES-843) GN=petC PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.015e-58
Identity = 100/133 (75.19%), Postives = 117/133 (87.97%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 401
            G  GGG TAKDA+GND+I + +L +H  GDRTL +GLKGDPTYLVV++DKTLA+YGINAVCTHLGCVVPWN++E KF+CPCHGSQYN +G+VVRGPAPLSLALAHAN+ +N KVVF  WTETDFRTGE PWW+
Sbjct:   47 GGTGGGVTAKDALGNDVIVSQFLTSHNAGDRTLAQGLKGDPTYLVVQEDKTLANYGINAVCTHLGCVVPWNASEEKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDNDKVVFSTWTETDFRTGEEPWWS 179          
The following BLAST results are available for this feature:
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_SPIOL2.257e-6684.09Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ARATH5.028e-6684.21Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ORYSJ1.120e-6581.82Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC2.495e-6584.09Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_TOBAC1.238e-6483.33Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_SOLTU8.027e-6481.34Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_WHEAT1.048e-6380.15Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG1.788e-6380.45Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_PEA3.050e-6379.85Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_MICAN1.015e-5875.19Cytochrome b6-f complex iron-sulfur subunit OS=Mic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00597 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00597 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623506 ID=BQ623506; Name=BQ623506; organism=Citrus sinensis; type=EST; length=679bp
GTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAAT
GACATCATTGCCGCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAAC
CCTCACCGAAGGATTGAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAG
ACAAAACACTTGCATCATATGGAATCAATGCTGTCTGCACTCACCTTGGA
TGTGTGGTGCCATGGAATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCA
CGGATCCCAATACAATAACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCAT
TGTCATTGGCATTGGCTCATGCCAACATTGAAAATGGTAAGGTAGTCTTC
GTTCCATGGACGGAAACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGC
TTAAACTTGTTCCGGTGCCTGTGCTTTCAATATTCAAGTTTTGGCCGGTC
GGTTTGCTTTGCCGTACTGCATAAACATACTGTAACGGAACATGCTTTAT
CAGAATGAAGCTTACAACATGTAAAGCTACTTGGCTTGAATCATGCTATC
TTGTAATCTTGGCAATCTTGACAATTTTCTCTTATCCATTCATTCTTTGA
TCTCAAAAATTCATACGCTCAACAATGTAATGCTACAGCTTCAACGTTGG
ATATAAGTTTTATCATTTATTAAGTAAAA
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