BQ623517

Overview
NameBQ623517
Unique NameBQ623517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9094 contig Csv1_Contig9094:392..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623517 vs. ExPASy Swiss-Prot
Match: HBL1_GOSHI (Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum GN=HB1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.097e-52
Identity = 98/116 (84.48%), Postives = 108/116 (93.10%), Query Frame = 2
Query:    2 IAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEMK 349
            IAPSAKKLF+FL+DS++P+EQN KLKPHA +VFVMTCESAVQLRKAGKVTVRESNLK LGATHFKYGV DEHFEVTK+ALLETIKEAVP+MWS E+KNAW EAYD+L AAIK EMK
Sbjct:   42 IAPSAKKLFSFLRDSNVPLEQNTKLKPHAMSVFVMTCESAVQLRKAGKVTVRESNLKKLGATHFKYGVVDEHFEVTKFALLETIKEAVPDMWSDEMKNAWGEAYDRLVAAIKIEMK 157          
BLAST of BQ623517 vs. ExPASy Swiss-Prot
Match: HBP2_CASGL (Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.530e-51
Identity = 96/117 (82.05%), Postives = 110/117 (94.02%), Query Frame = 2
Query:    2 IAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEMKP 352
            IAPSA+KLF+FLKDS++P+E+NPKLK HA +VF+MTCESAVQLRKAGKVTVRES+LK LGA+HFK+GVADEHFEVTK+ALLETIKEAVPE WSPE+KNAW EAYD+L AAIK EMKP
Sbjct:   42 IAPSAQKLFSFLKDSNVPLERNPKLKSHAMSVFLMTCESAVQLRKAGKVTVRESSLKKLGASHFKHGVADEHFEVTKFALLETIKEAVPETWSPEMKNAWGEAYDKLVAAIKLEMKP 158          
BLAST of BQ623517 vs. ExPASy Swiss-Prot
Match: HBL1_MEDSA (Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=MHB1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.304e-51
Identity = 96/117 (82.05%), Postives = 107/117 (91.45%), Query Frame = 2
Query:    2 IAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEMKP 352
            IAPSA+KLF+FLKDS +P+EQN KLKPHA +VF+MTCESAVQLRK+GKVTVRES+LK LGA HFKYGV DEHFEVTK+ALLETIKEAVPEMWSP +KNAW EAYDQL  AIK+EMKP
Sbjct:   42 IAPSAQKLFSFLKDSKVPLEQNTKLKPHAMSVFLMTCESAVQLRKSGKVTVRESSLKKLGANHFKYGVVDEHFEVTKFALLETIKEAVPEMWSPAMKNAWGEAYDQLVNAIKSEMKP 158          
BLAST of BQ623517 vs. ExPASy Swiss-Prot
Match: HBL_TRETO (Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 7.361e-51
Identity = 99/117 (84.62%), Postives = 107/117 (91.45%), Query Frame = 2
Query:    2 IAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEMKP 352
            IAPSAK LF++LKDS IP+EQNPKLKPHA TVFVMTCESAVQLRKAGKVTVRESNLK LGA HFK GV +EHFE T++ALLETIKEAVPEMWSPE+KNAW EAYDQL AAIK+EMKP
Sbjct:   43 IAPSAKNLFSYLKDSPIPLEQNPKLKPHAMTVFVMTCESAVQLRKAGKVTVRESNLKRLGAIHFKNGVVNEHFE-TRFALLETIKEAVPEMWSPEMKNAWGEAYDQLVAAIKSEMKP 158          
BLAST of BQ623517 vs. ExPASy Swiss-Prot
Match: HBPL_PARRI (Non-legume hemoglobin OS=Parasponia rigida PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 1.640e-50
Identity = 95/117 (81.20%), Postives = 106/117 (90.60%), Query Frame = 2
Query:    2 IAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEMKP 352
            IAPSAK LF++LKDS +P+EQNPKLKPHATTVFVMTCESAVQLRKAGK TV+ES+LK +GA HFK GV +EHFEVT++ALLETIKEAVPEMWSPE+KNAW  AYDQL AAIK EMKP
Sbjct:   43 IAPSAKNLFSYLKDSPVPLEQNPKLKPHATTVFVMTCESAVQLRKAGKATVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIKEAVPEMWSPEMKNAWGVAYDQLVAAIKFEMKP 159          
BLAST of BQ623517 vs. ExPASy Swiss-Prot
Match: HBPL_PARAD (Non-legume hemoglobin OS=Parasponia andersonii PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 1.640e-50
Identity = 95/117 (81.20%), Postives = 106/117 (90.60%), Query Frame = 2
Query:    2 IAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEMKP 352
            IAPSAK LF++LKDS +P+EQNPKLKPHATTVFVMTCESAVQLRKAGK TV+ES+LK +GA HFK GV +EHFEVT++ALLETIKEAVPEMWSPE+KNAW  AYDQL AAIK EMKP
Sbjct:   43 IAPSAKNLFSYLKDSPVPLEQNPKLKPHATTVFVMTCESAVQLRKAGKATVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIKEAVPEMWSPEMKNAWGVAYDQLVAAIKFEMKP 159          
BLAST of BQ623517 vs. ExPASy Swiss-Prot
Match: HBL1_ARATH (Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana GN=AHB1 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 90/115 (78.26%), Postives = 99/115 (86.09%), Query Frame = 2
Query:    2 IAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEM 346
            IAP+ KK+F+FL+DS IP EQNPKLKPHA +VFVM CESAVQLRK GKVTVRE+ LK LGA+H KYGV DEHFEV KYALLETIKEAVPEMWSPE+K AW +AYD L AAIK EM
Sbjct:   42 IAPTTKKMFSFLRDSPIPAEQNPKLKPHAMSVFVMCCESAVQLRKTGKVTVRETTLKRLGASHSKYGVVDEHFEVAKYALLETIKEAVPEMWSPEMKVAWGQAYDHLVAAIKAEM 156          
BLAST of BQ623517 vs. ExPASy Swiss-Prot
Match: HBL_HORVU (Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.876e-46
Identity = 87/118 (73.73%), Postives = 103/118 (87.29%), Query Frame = 2
Query:    2 IAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVP-EMWSPELKNAWAEAYDQLAAAIKTEMKP 352
            IAPSA+++F FL+DSD+P+E NPKLK HA +VFVMTCE+A QLRKAGK+TVRE+ LK LG TH KYGVAD HFEVT++ALLETIKEA+P +MW PE++NAW EAYDQL AAIK EMKP
Sbjct:   43 IAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFALLETIKEALPADMWGPEMRNAWGEAYDQLVAAIKQEMKP 160          
BLAST of BQ623517 vs. ExPASy Swiss-Prot
Match: HBL2_ORYSJ (Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. japonica GN=HB2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.129e-46
Identity = 86/118 (72.88%), Postives = 106/118 (89.83%), Query Frame = 2
Query:    2 IAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVP-EMWSPELKNAWAEAYDQLAAAIKTEMKP 352
            +APSA ++F+FL++SD+P+E+NPKLK HA +VFVMTCE+A QLRKAGKVTVR++ LK LGATHFKYGV D HFEVT++ALLETIKEAVP +MWSP +K+AW+EAY+QL AAIK EMKP
Sbjct:   50 VAPSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDAHFEVTRFALLETIKEAVPVDMWSPAMKSAWSEAYNQLVAAIKQEMKP 167          
BLAST of BQ623517 vs. ExPASy Swiss-Prot
Match: HBL_ZEAMP (Non-symbiotic hemoglobin OS=Zea mays subsp. parviglumis GN=HB PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.216e-45
Identity = 89/118 (75.42%), Postives = 104/118 (88.14%), Query Frame = 2
Query:    2 IAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVP-EMWSPELKNAWAEAYDQLAAAIKTEMKP 352
            IAPSAK++F+FL+DSD+P+E+NPKLK HA +VFVMTCE+A QLRKAGKVTVRE+ LK LGATH +YGVAD HFEVT +ALLETIKEA+P +MWS E+K AWAEAY QL AAIK EMKP
Sbjct:   46 IAPSAKQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKP 163          
The following BLAST results are available for this feature:
BLAST of BQ623517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBL1_GOSHI5.097e-5284.48Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum G... [more]
HBP2_CASGL2.530e-5182.05Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1[more]
HBL1_MEDSA3.304e-5182.05Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=M... [more]
HBL_TRETO7.361e-5184.62Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB... [more]
HBPL_PARRI1.640e-5081.20Non-legume hemoglobin OS=Parasponia rigida PE=1 SV... [more]
HBPL_PARAD1.640e-5081.20Non-legume hemoglobin OS=Parasponia andersonii PE=... [more]
HBL1_ARATH3.780e-4778.26Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana... [more]
HBL_HORVU1.876e-4673.73Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB ... [more]
HBL2_ORYSJ7.129e-4672.88Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. ... [more]
HBL_ZEAMP1.216e-4575.42Non-symbiotic hemoglobin OS=Zea mays subsp. parvig... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00608 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00608 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623517 ID=BQ623517; Name=BQ623517; organism=Citrus sinensis; type=EST; length=512bp
GATTGCACCATCAGCAAAGAAGCTGTTCACTTTTCTCAAAGATTCAGATA
TTCCTGTGGAGCAGAATCCGAAACTAAAGCCCCATGCCACGACTGTCTTT
GTTATGACGTGTGAATCGGCAGTGCAACTTAGAAAGGCTGGCAAAGTTAC
AGTGAGAGAGTCCAATCTAAAAGACTTGGGAGCTACCCATTTCAAATACG
GAGTTGCTGATGAACATTTTGAGGTGACAAAGTATGCATTGTTGGAGACC
ATAAAGGAAGCAGTACCTGAAATGTGGTCACCAGAGTTGAAGAATGCTTG
GGCGGAGGCTTATGATCAACTGGCTGCCGCCATCAAAACTGAAATGAAGC
CTCCTTTATAATTTGCTGATTGAATGTAAAAGTGATGCTGTTTCATGGAA
AAAAATAATATTGTAAAAATGTCATGTAATCATCAATTATCGAATATTGT
GTTGATCTAATCTAAGATCCAGTTCTCTCCAACAGAGCAATCTAATGATC
ATTTGTGAGTTT
back to top