BQ623524

Overview
NameBQ623524
Unique NameBQ623524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:594..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.032e-43
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  173 SFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          

HSP 2 Score: 50.447 bits (119), Expect = 1.032e-43
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 3
Query:    3 EGYRIAGGPLGEVTDPLYPGGS 68
            EGYRIAGGPLGEVTDP+YPGGS
Sbjct:  152 EGYRIAGGPLGEVTDPIYPGGS 173          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.282e-43
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 SFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          

HSP 2 Score: 50.0618 bits (118), Expect = 2.282e-43
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 3
Query:    3 EGYRIAGGPLGEVTDPLYPGGSL*SIG 83
            EGYR+AGGPLGEV DPLYPGGS   +G
Sbjct:  171 EGYRVAGGPLGEVVDPLYPGGSFDPLG 197          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 5.470e-42
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 SFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          

HSP 2 Score: 49.6766 bits (117), Expect = 5.470e-42
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 3
Query:    3 EGYRIAGGPLGEVTDPLYPGGSL*SIG 83
            EGYR+AGGPLGE+ DPLYPGGS   +G
Sbjct:  171 EGYRVAGGPLGEIVDPLYPGGSFDPLG 197          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.102e-39
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   78 AFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          

HSP 2 Score: 41.5874 bits (96), Expect = 1.102e-39
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 3
Query:    3 EGYRIAGGPLGEVTDPLYPGGSL*SIG 83
            EGYR+ GGPLGE  DPLYPG +   +G
Sbjct:   57 EGYRVGGGPLGEGLDPLYPGDAFDPLG 83          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.033e-39
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  194 AFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          

HSP 2 Score: 38.1206 bits (87), Expect = 9.033e-39
Identity = 16/27 (59.26%), Postives = 19/27 (70.37%), Query Frame = 3
Query:    3 EGYRIAGGPLGEVTDPLYPGGSL*SIG 83
            EGYR+ GG LGE  DPL PGG+   +G
Sbjct:  173 EGYRVGGGTLGEGLDPLLPGGAFDPLG 199          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.522e-38
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   52 SFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          

HSP 2 Score: 38.5058 bits (88), Expect = 4.522e-38
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 3
Query:    3 EGYRIAG-GPLGEVTDPLYPGGS 68
            EGYR+AG GPLGE  D LYPGGS
Sbjct:   30 EGYRVAGDGPLGEAEDLLYPGGS 52          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.083e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.412e-36
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  189 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.114e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  134 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.114e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  183 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
The following BLAST results are available for this feature:
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_SOYBN1.032e-4395.89Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_HORVU2.282e-4395.89Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_APIGR5.470e-4291.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PINSY1.102e-3994.52Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_PINTH9.033e-3994.52Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_RAPSA4.522e-3891.78Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_ORYSJ1.083e-36100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ2.412e-3698.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA4.114e-3697.26Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA4.114e-3697.26Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00615 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00615 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623524 ID=BQ623524; Name=BQ623524; organism=Citrus sinensis; type=EST; length=519bp
TTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCA
TTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGGCTGATGACCCGG
AGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCT
ATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGG
ACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAATG
CCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGAT
AACATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATGTG
ACTCTATTTCAACTTGCAAAACATGTGAATTATGTAATGTACTGCTACTA
CCAGTTTGAGGGGATTGTATTTTCATTCAATCTCTTGTCGCACGGGTCTA
GTTCTAGATACCTCCTCCTTACAGGGTGTGCCCGTAATCTAGTTACCAAA
TTTACATTGCTTAGAAATA
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