BQ623528

Overview
NameBQ623528
Unique NameBQ623528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length285
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.658e-20
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKSV 189
            IPLLV+ NKNDLP + GVDE+I  L+LR + GREVC YSISAKN VNID+TL+WLIKHS SV
Sbjct:  122 IPLLVVANKNDLPNSAGVDEMIQNLDLRGIVGREVCCYSISAKNSVNIDITLDWLIKHSSSV 183          
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: ARL8A_HUMAN (ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.368e-17
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKS 186
            IP+LVLGNK DLPGA+   E+I+K+NL A++ RE+C YSIS K + NID+TL+WLI+HSKS
Sbjct:  123 IPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183          
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: ARL8A_CHICK (ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.368e-17
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKS 186
            IP+LVLGNK DLPGA+   E+I+K+NL A++ RE+C YSIS K + NID+TL+WLI+HSKS
Sbjct:  123 IPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183          
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: ARL8A_XENTR (ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.998e-17
Identity = 37/61 (60.66%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKS 186
            IP+LVLGNK D+PGA+   E+I+++NL A++ RE+C YSIS K + NID+TL+WLI+HSKS
Sbjct:  123 IPVLVLGNKRDIPGALDEKELIERMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183          
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: ARL8A_MOUSE (ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.005e-16
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKS 186
            IP+LVLGNK DL GA+   E+I+K+NL A++ RE+C YSIS K + NID+TL+WLI+HSKS
Sbjct:  123 IPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183          
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: ARL8B_RAT (ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.618e-16
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKS 186
            IP+LVLGNK DLP A+   ++I+K+NL A++ RE+C YSIS K + NID+TL+WLI+HSKS
Sbjct:  123 IPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183          
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: ARL8B_PONAB (ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.618e-16
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKS 186
            IP+LVLGNK DLP A+   ++I+K+NL A++ RE+C YSIS K + NID+TL+WLI+HSKS
Sbjct:  123 IPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183          
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: ARL8B_MOUSE (ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.618e-16
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKS 186
            IP+LVLGNK DLP A+   ++I+K+NL A++ RE+C YSIS K + NID+TL+WLI+HSKS
Sbjct:  123 IPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183          
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: ARL8B_HUMAN (ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.618e-16
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKS 186
            IP+LVLGNK DLP A+   ++I+K+NL A++ RE+C YSIS K + NID+TL+WLI+HSKS
Sbjct:  123 IPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183          
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: ARL8B_BOVIN (ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.618e-16
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKS 186
            IP+LVLGNK DLP A+   ++I+K+NL A++ RE+C YSIS K + NID+TL+WLI+HSKS
Sbjct:  123 IPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183          
The following BLAST results are available for this feature:
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ARL8_DICDI6.658e-2072.58ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
ARL8A_HUMAN2.368e-1763.93ADP-ribosylation factor-like protein 8A OS=Homo sa... [more]
ARL8A_CHICK2.368e-1763.93ADP-ribosylation factor-like protein 8A OS=Gallus ... [more]
ARL8A_XENTR8.998e-1760.66ADP-ribosylation factor-like protein 8A OS=Xenopus... [more]
ARL8A_MOUSE2.005e-1662.30ADP-ribosylation factor-like protein 8A OS=Mus mus... [more]
ARL8B_RAT2.618e-1660.66ADP-ribosylation factor-like protein 8B OS=Rattus ... [more]
ARL8B_PONAB2.618e-1660.66ADP-ribosylation factor-like protein 8B OS=Pongo a... [more]
ARL8B_MOUSE2.618e-1660.66ADP-ribosylation factor-like protein 8B OS=Mus mus... [more]
ARL8B_HUMAN2.618e-1660.66ADP-ribosylation factor-like protein 8B OS=Homo sa... [more]
ARL8B_BOVIN2.618e-1660.66ADP-ribosylation factor-like protein 8B OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00619 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00619 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623528 ID=BQ623528; Name=BQ623528; organism=Citrus sinensis; type=EST; length=285bp
AGCATTCCTTTGCTTGTGTTAGGAAACAAGAACGATCTGCCTGGTGCTAT
TGGTGTTGACGAAATCATTGACAAACTGAACCTTCGTGCTGTTGAAGGTC
GTGAAGTATGCGTCTATTCGATTTCTGCCAAGAACCAAGTCAACATTGAT
ATGACATTGGAGTGGCTCATAAAGCACTCAAAATCTGTTTAATTTGTAAC
ATAGGCAAATCAGCAATCAGGAGTCCTTGAAGATGTGTTTGGAGCACAAT
TCACTTGTACATCCATTAATATTTATCATCATAAA
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