BQ623534

Overview
NameBQ623534
Unique NameBQ623534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12918 contig Csv1_Contig12918:1092..1757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Match: DRP3A_ARATH (Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 5.360e-65
Identity = 128/191 (67.02%), Postives = 154/191 (80.63%), Query Frame = 3
Query:   18 KESVTNKPFSEPVQNMEHAFAMIHLREPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFRTLDELPLEADSVERGYNMSADPTGLPKIHGWPTSSMYTTSSGSNDSYTASPKNPKSRKSSHSGE 590
            K+S+ NKPFSE V++M H  +MI+L+EPP +LRP+E+HSEQE VEI +TKLLLRSYYDIVRKNIEDS+PKA+MHFLVNHTKRELHNVFIKKLYRENLFEEMLQEP+E+A+KRKRT++TL VLQQA+RTLDELPLEADSV           G+ K     TSS Y+TSS    SY+ASP    +R+S  +G+
Sbjct:  625 KDSLLNKPFSEAVEDMSHNLSMIYLKEPPAVLRPTETHSEQEAVEIQITKLLLRSYYDIVRKNIEDSVPKAIMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPDEIAVKRKRTQETLHVLQQAYRTLDELPLEADSVS---------AGMSKHQELLTSSKYSTSS----SYSASPST--TRRSRRAGD 800          
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Match: DRP3B_ARATH (Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.373e-57
Identity = 104/151 (68.87%), Postives = 133/151 (88.08%), Query Frame = 3
Query:    9 SAGKESVTNKPFSEPVQNMEHAFAMIHLREPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFRTLDELPLEADSVERGYNMSAD 461
            +A K ++ NKPFSE  Q +    + I+L+EPPTIL+ SE+HSEQE+VEI +TKLLL+SYYDIVRKN+ED +PKA+MHFLVN+TKRELHNVFI+KLYRENL EE+L+EP+E+A+KRKRT++TLR+LQQA RTLDELPLEA+SVERGY + ++
Sbjct:  606 AAAKNNLLNKPFSETTQEVYQNLSTIYLKEPPTILKSSETHSEQESVEIEITKLLLKSYYDIVRKNVEDLVPKAIMHFLVNYTKRELHNVFIEKLYRENLIEELLKEPDELAIKRKRTQETLRILQQANRTLDELPLEAESVERGYKIGSE 756          
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18
Identity = 39/108 (36.11%), Postives = 74/108 (68.52%), Query Frame = 3
Query:   90 LREPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFRTLDEL 413
            L + P+I++  +  + +E  E  + + LL SY++IV+KN++DS+PK++MHFLVN +K  + N  +  LY+E LF+E+L+E  +++ KRK  +  + +L++A   ++E+
Sbjct:  741 LNQVPSIIKAPDDLTSKEKFETELIRELLISYFNIVKKNVKDSVPKSIMHFLVNQSKEHIQNELVAALYKEELFDELLEESPQISSKRKSCKAMIEILRKANEIINEI 848          
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Match: DNM1L_RAT (Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm1l PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 46/110 (41.82%), Postives = 72/110 (65.45%), Query Frame = 3
Query:   84 IHLREPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFRTLDEL 413
            ++L + P  +    S  EQ + E  V + L++SY+ IVRKNI+DS+PKAVMHFLVNH K  L +  + +LY+ +L +++L E E++A +RK   D L+ LQ A + + E+
Sbjct:  642 VNLLDVPVPVARKLSAREQRDCE--VIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQSELVGQLYKSSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAEI 749          
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Match: DNM1L_MOUSE (Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 46/110 (41.82%), Postives = 72/110 (65.45%), Query Frame = 3
Query:   84 IHLREPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFRTLDEL 413
            ++L + P  +    S  EQ + E  V + L++SY+ IVRKNI+DS+PKAVMHFLVNH K  L +  + +LY+ +L +++L E E++A +RK   D L+ LQ A + + E+
Sbjct:  629 VNLLDVPVPVARKLSAREQRDCE--VIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQSELVGQLYKSSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAEI 736          
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Match: DNM1L_HUMAN (Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 46/110 (41.82%), Postives = 72/110 (65.45%), Query Frame = 3
Query:   84 IHLREPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFRTLDEL 413
            ++L + P  +    S  EQ + E  V + L++SY+ IVRKNI+DS+PKAVMHFLVNH K  L +  + +LY+ +L +++L E E++A +RK   D L+ LQ A + + E+
Sbjct:  623 VNLLDVPVPVARKLSAREQRDCE--VIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQSELVGQLYKSSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAEI 730          
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Match: DNM1L_BOVIN (Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 46/110 (41.82%), Postives = 72/110 (65.45%), Query Frame = 3
Query:   84 IHLREPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFRTLDEL 413
            ++L + P  +    S  EQ + E  V + L++SY+ IVRKNI+DS+PKAVMHFLVNH K  L +  + +LY+ +L +++L E E++A +RK   D L+ LQ A + + E+
Sbjct:  636 VNLLDVPVPVARKLSAREQRDCE--VIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQSELVGQLYKSSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAEI 743          
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Match: DNM1L_DANRE (Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.435e-17
Identity = 45/110 (40.91%), Postives = 71/110 (64.55%), Query Frame = 3
Query:   84 IHLREPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFRTLDEL 413
            ++L + P  +    S  EQ + E  V + L++SY+ IVRKNI+DS+PKAVMHFLVNH K  L +  + +LY+  L +++L E E++A +R    D L+ LQ+A + + E+
Sbjct:  578 VNLLDVPVPVARKLSAREQRDCE--VIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDSLQSELVGQLYKPALLDDLLTESEDMAQRRNEAADMLKALQKASQVIAEI 685          
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Match: YB68_SCHPO (Dynamin-like protein C12C2.08 OS=Schizosaccharomyces pombe GN=SPBC12C2.08 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  123 ESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQA 392
            E  SE+E VE+ + K L+ SY+++ RK I D +PK +MH LVN +K  + N  + KLYRE+ F+ +L E E V  +R++    L V  QA
Sbjct:  684 EDMSEREEVEVDLIKELITSYFNLTRKIIIDQVPKVIMHLLVNASKDAIQNRLVSKLYREDFFDTLLIEDENVKSEREKCERLLSVYNQA 773          
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Match: DNM1_YEAST (Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae GN=DNM1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = 3
Query:  132 SEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQA 392
            +E+E +E  + K L+ SY+DI+R+ IED +PKAVM  LVN+ K  + N  + KLY+E LFEE+L E + +A  R+    +L V ++A
Sbjct:  663 TEREELECELIKRLIVSYFDIIREMIEDQVPKAVMCLLVNYCKDSVQNRLVTKLYKETLFEELLVEDQTLAQDRELCVKSLGVYKKA 749          
The following BLAST results are available for this feature:
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
DRP3A_ARATH5.360e-6567.02Dynamin-related protein 3A OS=Arabidopsis thaliana... [more]
DRP3B_ARATH5.373e-5768.87Dynamin-related protein 3B OS=Arabidopsis thaliana... [more]
DYNA_DICDI1.690e-1836.11Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1... [more]
DNM1L_RAT1.868e-1741.82Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm... [more]
DNM1L_MOUSE1.868e-1741.82Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE... [more]
DNM1L_HUMAN1.868e-1741.82Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE... [more]
DNM1L_BOVIN1.868e-1741.82Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2... [more]
DNM1L_DANRE5.435e-1740.91Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=... [more]
YB68_SCHPO9.594e-1442.22Dynamin-like protein C12C2.08 OS=Schizosaccharomyc... [more]
DNM1_YEAST2.791e-1343.68Dynamin-related protein DNM1 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00625 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00625 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623534 ID=BQ623534; Name=BQ623534; organism=Citrus sinensis; type=EST; length=667bp
ACCGTGTGTCTGCTGGCAAGGAGAGCGTAACAAACAAGCCATTCAGTGAG
CCTGTCCAGAACATGGAGCATGCTTTTGCTATGATCCATTTGAGAGAGCC
TCCAACCATCTTGAGGCCCTCAGAAAGCCATTCAGAACAGGAGAATGTTG
AAATCGCAGTGACAAAATTGCTGTTGAGATCATACTATGATATTGTTCGG
AAGAATATCGAGGACTCAATACCTAAAGCAGTTATGCATTTCCTGGTGAA
TCATACAAAACGTGAGCTGCATAATGTCTTCATTAAAAAGCTTTACAGAG
AAAACCTGTTTGAAGAGATGCTTCAGGAGCCTGAGGAGGTAGCAATGAAG
AGAAAGCGTACACGAGACACACTCCGAGTTCTTCAGCAAGCTTTTCGGAC
ATTGGATGAATTGCCATTAGAAGCTGATTCAGTTGAGAGGGGATACAATA
TGAGCGCTGATCCCACAGGACTGCCAAAGATCCATGGATGGCCGACGTCG
TCTATGTATACTACCAGCAGTGGTTCAAATGATTCCTATACAGCTTCTCC
AAAAAACCCAAAATCCAGGAAGTCGTCTCACTCAGGGGAGCTACAATCAC
ATCTCTTTTCTAACGCCGATTCTAACGGAAGTGGGTCGTATGTACATGCC
GGGTCTCTATCCGACAG
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