BQ623542

Overview
NameBQ623542
Unique NameBQ623542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5331 contig Csv1_Contig5331:622..1292. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623542 vs. ExPASy Swiss-Prot
Match: DEGP1_ARATH (Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 1.973e-91
Identity = 173/202 (85.64%), Postives = 179/202 (88.61%), Query Frame = 3
Query:    6 DKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEV 611
            +KLRPIP+GVSADLLVGQKV+AIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAIN                   TAIYSPSGASSGVGFSIPVDTV GIVDQLV+FGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPP+GPAGKAGL STKRD YGRL+LGDIITSVNG KVSNGSDLYRILDQCKVGDEV
Sbjct:  214 NKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGDEV 415          
BLAST of BQ623542 vs. ExPASy Swiss-Prot
Match: DEGP8_ARATH (Protease Do-like 8, chloroplastic OS=Arabidopsis thaliana GN=DEGP8 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.070e-40
Identity = 99/201 (49.25%), Postives = 122/201 (60.70%), Query Frame = 3
Query:   12 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGV-SGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEV 611
            L+PI +G S  L VGQ+  AIGNPFG DHTLT GVISGL R+I S  TG  I   IQTDAAIN                   TAI++ +G S+GVGF+IP  TV  IV QL++F KV R  + I+ APD    QL V +G LVL  P    A KAGL  T R   G ++LGDII +V+ K V N ++L +ILD+  VGD+V
Sbjct:  227 LKPIKVGQSNSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFS-QTGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIFTQTGTSAGVGFAIPSSTVLKIVPQLIQFSKVLRAGINIELAPDPVANQLNVRNGALVLQVPGKSLAEKAGLHPTSRGFAGNIVLGDIIVAVDDKPVKNKAELMKILDEYSVGDKV 426          
BLAST of BQ623542 vs. ExPASy Swiss-Prot
Match: DEGP_BRUSU (Probable serine protease do-like OS=Brucella suis GN=degP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.348e-23
Identity = 70/201 (34.83%), Postives = 101/201 (50.25%), Query Frame = 3
Query:   21 IPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP--DQSVEQLGVS---GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDE 608
            +  G    + VG  V A+GNPFGL  T+T+G++S   R+I +     P  D IQ DAA+N                   TAI+SPSG S G+ F+IP  T   +VDQL+K G V R  +G++  P        LG++   G +V     +GPA KAG+ +           GD+IT+VNG+ V +  DL R +     G++
Sbjct:  198 VAFGDDNKVRVGDWVVAVGNPFGLGGTVTSGIVSARGRDIGAG----PYDDFIQIDAAVNKGNSGGPAFDLSGEVIGINTAIFSPSGGSVGIAFAIPSSTAKQVVDQLIKKGSVERGWIGVQIQPVTKDIAASLGLAEEKGAIVASPQDDGPAAKAGIKA-----------GDVITAVNGETVQDPRDLARKVANIAPGEK 383          
BLAST of BQ623542 vs. ExPASy Swiss-Prot
Match: DEGP_BRUME (Probable serine protease do-like OS=Brucella melitensis GN=degP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.348e-23
Identity = 70/201 (34.83%), Postives = 101/201 (50.25%), Query Frame = 3
Query:   21 IPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP--DQSVEQLGVS---GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDE 608
            +  G    + VG  V A+GNPFGL  T+T+G++S   R+I +     P  D IQ DAA+N                   TAI+SPSG S G+ F+IP  T   +VDQL+K G V R  +G++  P        LG++   G +V     +GPA KAG+ +           GD+IT+VNG+ V +  DL R +     G++
Sbjct:  198 VAFGDDNKVRVGDWVVAVGNPFGLGGTVTSGIVSARGRDIGAG----PYDDFIQIDAAVNKGNSGGPAFDLSGEVIGINTAIFSPSGGSVGIAFAIPSSTAKQVVDQLIKKGSVERGWIGVQIQPVTKDIAASLGLAEEKGAIVASPQDDGPAAKAGIKA-----------GDVITAVNGETVQDPRDLARKVANIAPGEK 383          
BLAST of BQ623542 vs. ExPASy Swiss-Prot
Match: DEGP_BRUAB (Probable serine protease do-like OS=Brucella abortus GN=degP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.348e-23
Identity = 70/201 (34.83%), Postives = 101/201 (50.25%), Query Frame = 3
Query:   21 IPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP--DQSVEQLGVS---GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDE 608
            +  G    + VG  V A+GNPFGL  T+T+G++S   R+I +     P  D IQ DAA+N                   TAI+SPSG S G+ F+IP  T   +VDQL+K G V R  +G++  P        LG++   G +V     +GPA KAG+ +           GD+IT+VNG+ V +  DL R +     G++
Sbjct:  198 VAFGDDNKVRVGDWVVAVGNPFGLGGTVTSGIVSARGRDIGAG----PYDDFIQIDAAVNKGNSGGPAFDLSGEVIGINTAIFSPSGGSVGIAFAIPSSTAKQVVDQLIKKGSVERGWIGVQIQPVTKDIAASLGLAEEKGAIVASPQDDGPAAKAGIKA-----------GDVITAVNGETVQDPRDLARKVANIAPGEK 383          
BLAST of BQ623542 vs. ExPASy Swiss-Prot
Match: DEGP_BRUA2 (Probable serine protease do-like OS=Brucella abortus (strain 2308) GN=degP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.348e-23
Identity = 70/201 (34.83%), Postives = 101/201 (50.25%), Query Frame = 3
Query:   21 IPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP--DQSVEQLGVS---GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDE 608
            +  G    + VG  V A+GNPFGL  T+T+G++S   R+I +     P  D IQ DAA+N                   TAI+SPSG S G+ F+IP  T   +VDQL+K G V R  +G++  P        LG++   G +V     +GPA KAG+ +           GD+IT+VNG+ V +  DL R +     G++
Sbjct:  198 VAFGDDNKVRVGDWVVAVGNPFGLGGTVTSGIVSARGRDIGAG----PYDDFIQIDAAVNKGNSGGPAFDLSGEVIGINTAIFSPSGGSVGIAFAIPSSTAKQVVDQLIKKGSVERGWIGVQIQPVTKDIAASLGLAEEKGAIVASPQDDGPAAKAGIKA-----------GDVITAVNGETVQDPRDLARKVANIAPGEK 383          
BLAST of BQ623542 vs. ExPASy Swiss-Prot
Match: DEGP_BARHE (Probable periplasmic serine protease DO-like OS=Bartonella henselae GN=degP PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 75/225 (33.33%), Postives = 107/225 (47.56%), Query Frame = 3
Query:    9 KLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP-----DQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIG*GIAPEIRRRRFPVKLE 668
            K   +  G  + L VG  V AIGNPFGL  T+T G++S   R+I +        D IQ DAA+N                   TAI+SPSG + G+ F+IP  T   +V QL++ G V R  LG++  P       S+      G L+ D P  GPA KAG+ +           GD+I SVNG+K+++  DL + +     G E +  G+    +     VKL+
Sbjct:  184 KFSYVDFGDDSKLRVGDWVVAIGNPFGLGGTVTAGIVSARGRDIGTGV----YDDFIQIDAAVNRGNSGGPTFDLNGKVVGVNTAIFSPSGGNVGIAFAIPAATAKQVVQQLIEKGLVQRGWLGVQIQPVTKEISDSIGLKEAKGALITD-PLKGPAAKAGIKA-----------GDVIISVNGEKINDVRDLAKRIANMSPG-ETVTLGVWKSGKEENIKVKLD 391          
BLAST of BQ623542 vs. ExPASy Swiss-Prot
Match: DEGP_RHIME (Probable serine protease do-like OS=Rhizobium meliloti GN=degP1 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.490e-22
Identity = 66/181 (36.46%), Postives = 92/181 (50.83%), Query Frame = 3
Query:   51 VGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP--DQSVEQLGVS---GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYR 578
            VG  V A+GNPFGL  T+T G+IS   R+I S     P  D +Q DAA+N                   TAI+SPSG + G+ F+IP      +VD L+K G V+R  LG++  P      E LG+S   G LV++     P  KAG+ +           GD++T++NG+ V +  DL R
Sbjct:  195 VGDWVVAVGNPFGLGGTVTAGIISARGRDIGSG----PYDDYLQVDAAVNRGNSGGPTFNLSGEVVGINTAIFSPSGGNVGIAFAIPASVAKDVVDSLIKDGTVSRGWLGVQIQPVTKDIAESLGLSEANGALVVEPQAGSPGEKAGIKN-----------GDVVTALNGEPVKDPRDLAR 360          
BLAST of BQ623542 vs. ExPASy Swiss-Prot
Match: HTOA_HAEIN (Probable periplasmic serine protease do/hhoA-like OS=Haemophilus influenzae GN=HI1259 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 70/205 (34.15%), Postives = 105/205 (51.22%), Query Frame = 3
Query:   12 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQS--VEQLGVS---GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEV 611
            L  I    S  L VG    AIGNPFGL  T+T+G++S L R  S+ +     ++ IQTDAA+N                   TAI SPSG ++G+ F+IP +  + +V Q+++FG+V R +LGIK     +   +   VS   G  V +  P   A KAGL +           GDIIT++NG+K+S+ +++   +     G E+
Sbjct:  162 LTEIKFADSDKLRVGDFTVAIGNPFGLGQTVTSGIVSALGR--STGSDSGTYENYIQTDAAVNRGNSGGALVNLNGELIGINTAIISPSGGNAGIAFAIPSNQASNLVQQILEFGQVRRGLLGIKGGELNADLAKAFNVSAQQGAFVSEVLPKSAAEKAGLKA-----------GDIITAMNGQKISSFAEIRAKIATTGAGKEI 353          
BLAST of BQ623542 vs. ExPASy Swiss-Prot
Match: Y938_SYNP6 (Uncharacterized serine protease syc0938_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0938_d PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 70/216 (32.41%), Postives = 102/216 (47.22%), Query Frame = 3
Query:    3 GDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFA-------------PDQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEV 611
            G++L    IG S+++ VG    AIGNP GLD+T+T G++S L R  S+        D IQTDA IN                   TAI    GA  G+GF+IPV+T   I  QL+K GKV+   LG++               P+ +V    V GVL++    N PA  AGL             GD++ + +G+ V+   +  R ++  +VG  +
Sbjct:  181 GERLPTARIGNSSNVEVGDWAIAIGNPLGLDNTVTLGIVSSLGRRSSAVGIPDKRLDFIQTDAVINPGNSGGPLVNSRGEVIGINTAIRQAPGA--GIGFAIPVNTAKQIETQLLKNGKVSHSYLGVQLLSLTPQMARDNNRDPNSTVRLPEVQGVLIMGVQRNAPAATAGLRR-----------GDVVIATDGQAVTTADEFQRRVEASQVGQSL 383          
The following BLAST results are available for this feature:
BLAST of BQ623542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DEGP1_ARATH1.973e-9185.64Protease Do-like 1, chloroplastic OS=Arabidopsis t... [more]
DEGP8_ARATH2.070e-4049.25Protease Do-like 8, chloroplastic OS=Arabidopsis t... [more]
DEGP_BRUSU1.348e-2334.83Probable serine protease do-like OS=Brucella suis ... [more]
DEGP_BRUME1.348e-2334.83Probable serine protease do-like OS=Brucella melit... [more]
DEGP_BRUAB1.348e-2334.83Probable serine protease do-like OS=Brucella abort... [more]
DEGP_BRUA21.348e-2334.83Probable serine protease do-like OS=Brucella abort... [more]
DEGP_BARHE5.122e-2333.33Probable periplasmic serine protease DO-like OS=Ba... [more]
DEGP_RHIME1.490e-2236.46Probable serine protease do-like OS=Rhizobium meli... [more]
HTOA_HAEIN1.648e-2134.15Probable periplasmic serine protease do/hhoA-like ... [more]
Y938_SYNP62.811e-2132.41Uncharacterized serine protease syc0938_d OS=Synec... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00633 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00633 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623542 ID=BQ623542; Name=BQ623542; organism=Citrus sinensis; type=EST; length=669bp
ACGGGGATAAATTAAGACCTATTCCTATTGGTGTCTCTGCAGACTTGCTT
GTTGGTCAGAAAGTATATGCTATTGGCAACCCCTTTGGACTCGACCATAC
CCTTACAACTGGCGTGATCAGTGGGCTTCGTAGGGAAATCAGTTCTGCAG
CCACTGGCCGTCCAATTCAGGATGTTATACAAACTGATGCGGCCATTAAT
CCTGGTAATAGTGGAGGGCCACTTTTAGATAGTTCAGGAAGCCTAATTGG
AATAAATACAGCTATATACTCTCCATCTGGTGCATCCTCTGGTGTTGGAT
TTTCGATTCCAGTTGACACTGTAAATGGCATTGTCGATCAACTAGTTAAG
TTTGGTAAGGTCACACGACCTATTTTAGGGATTAAGTTCGCACCTGATCA
ATCTGTGGAGCAGTTAGGTGTAAGTGGAGTGCTCGTCTTAGATGCTCCTC
CAAACGGTCCTGCTGGCAAAGCAGGCTTGCTATCAACCAAACGCGATGCC
TATGGCAGACTTATTTTGGGTGACATCATAACATCTGTGAATGGAAAAAA
GGTCTCCAATGGCAGCGACTTGTACAGAATTCTTGACCAATGTAAAGTTG
GAGATGAGGTGATTGGTTGAGGTATTGCGCCGGAGATCAGAAGGAGAAGA
TTCCCGGTAAAACTTGAAC
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