BQ623544
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: SF3B3_DICDI (Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum GN=sf3b3 PE=3 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 4.838e-58 Identity = 101/164 (61.59%), Postives = 132/164 (80.49%), Query Frame = 1 Query: 4 DRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495 DR+ VGDIQES HF KY+R EN LY+FADD PRW+T++ +D+DT+AGADKFGNI+ +RLP +SDE+EEDPTG K+K+E G LNGAP+K++ I F VGD VT+L K SLV GG E ++Y T+ G++GA++ F+SR+DVDFFS LEM+MR + PLCGRDH+ Sbjct: 1037 DRLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDYDTVAGADKFGNIFVLRLPLLISDEVEEDPTGTKLKFESGTLNGAPHKLDHIANFFVGDTVTTLNKTSLVVGGPEVILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSDCLPLCGRDHL 1200
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: SF3B3_MOUSE (Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 9.124e-57 Identity = 95/166 (57.23%), Postives = 129/166 (77.71%), Query Frame = 1 Query: 7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMGLQ 504 R+ V D+QESF + +Y+R+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++EDPTG K W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+ + Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFR 1164
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: SF3B3_HUMAN (Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4) HSP 1 Score: 219.164 bits (557), Expect = 9.124e-57 Identity = 95/166 (57.23%), Postives = 129/166 (77.71%), Query Frame = 1 Query: 7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMGLQ 504 R+ V D+QESF + +Y+R+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++EDPTG K W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+ + Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFR 1164
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: SF3B3_BOVIN (Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 9.124e-57 Identity = 95/166 (57.23%), Postives = 129/166 (77.71%), Query Frame = 1 Query: 7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMGLQ 504 R+ V D+QESF + +Y+R+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++EDPTG K W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+ + Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFR 1164
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: SF3B3_DANRE (Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 5.914e-56 Identity = 95/166 (57.23%), Postives = 126/166 (75.90%), Query Frame = 1 Query: 7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMGLQ 504 R+ V D+QES + +YRR+ENQL IFADD+ PRW+T A +D+DTMA ADKFGNI VRLP + SD+++EDPTG K W++G LNGA K E I+ +H+G+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF HLEMHMR E PPLCGRDH+ + Sbjct: 999 RVIVSDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLDYDTMASADKFGNICVVRLPPNTSDDVDEDPTGNKALWDRGLLNGASQKAEIIINYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHLEMHMRSEFPPLCGRDHLSFR 1164
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: SF3B3_PONAB (Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 3.833e-55 Identity = 94/166 (56.63%), Postives = 128/166 (77.11%), Query Frame = 1 Query: 7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMGLQ 504 R+ V D+QESF + +Y+R+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++EDPTG K ++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+ + Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALRDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFR 1164
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_CRYNE (Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans GN=RSE1 PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 2.949e-39 Identity = 79/164 (48.17%), Postives = 111/164 (67.68%), Query Frame = 1 Query: 7 RIYVGDIQESFHFCKYRR-DENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495 RI VGD+QES +C YR QL IFADDS PRW+T +D++T+A DKFGNI+ RL +S+++++DPTG I E+ L GA +K E I +++G VVTS+ K LV GG + ++Y T+ G++GA++ F S DD++F S LEMHMR + L GRDH+ Sbjct: 998 RIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVDYETVACGDKFGNIFINRLDPSISEKVDDDPTGATILHEKSFLMGAAHKTEMIGHYNIGSVVTSITKIPLVAGGRDVLVYTTISGAVGALVPFVSSDDIEFMSTLEMHMRTQDISLVGRDHI 1161
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_USTMA (Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis GN=RSE1 PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 3.260e-38 Identity = 77/163 (47.24%), Postives = 111/163 (68.10%), Query Frame = 1 Query: 7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495 RI VGD+QES F Y+ EN+L FADD +P+++T +D+DT+A ADKFGNIY +RL + S ++EDPTG I E+ L GA +K + F VGD++TSL + ++V GG E ++Y + GS+GA++ F S++DVD S LE H+RQE+ + GRDH+ Sbjct: 1002 RIVVGDMQESIIFASYKPLENRLVTFADDVMPKFVTRCTMLDYDTVAAADKFGNIYVLRLDGNTSRSVDEDPTGMTIVHEKPVLMGAAHKASLVAHFFVGDIITSLHRTAMVAGGREVLLYTGLSGSIGALVPFVSKEDVDTLSTLESHLRQENNSIVGRDHL 1164
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_ASPFU (Pre-mRNA-splicing factor rse1 OS=Aspergillus fumigatus GN=rse1 PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 2.760e-37 Identity = 70/163 (42.94%), Postives = 109/163 (66.87%), Query Frame = 1 Query: 7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495 RI V D++ES + Y+ +N L F DDSV RW T+ +D++T+AG DKFGN++ VR P+ S+E +ED +G + E+G L+GAPN+++ ++ + D+ TSL K LV GG + +++ G++G ++ F SR+DVDFF +LEM + + PPL GRDH+ Sbjct: 991 RIVVSDVRESVTYVVYKYQDNILIPFVDDSVSRWTTSTTMVDYETVAGGDKFGNLWLVRCPKKASEEADEDGSGAHLIHERGYLHGAPNRLDLMIHTYTQDIPTSLHKTQLVAGGRDILVWTGFQGTIGMLVPFVSREDVDFFQNLEMQLASQCPPLAGRDHL 1153
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_EMENI (Pre-mRNA-splicing factor rse1 OS=Emericella nidulans GN=rse1 PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 2.336e-36 Identity = 69/163 (42.33%), Postives = 105/163 (64.42%), Query Frame = 1 Query: 7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495 RI V D++ES + Y+ +N L F DDS+ RW TAA +D++T AG DKFGN++ VR P+ S+E +E+ +G + ++G L G PN++E ++ D+ TSL K LV GG + +++ G++G ++ F SR+DVDFF LEM + + PPL GRDH+ Sbjct: 991 RIVVSDVRESVTYVVYKYQDNVLIPFVDDSIARWTTAATMVDYETTAGGDKFGNLWLVRCPKKASEEADEEGSGAHLIHDRGYLQGTPNRLELMIHVFTQDIPTSLHKTQLVAGGRDILVWTGFQGTIGILVPFVSREDVDFFQSLEMQLASQCPPLAGRDHL 1153 The following BLAST results are available for this feature:
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623544 ID=BQ623544; Name=BQ623544; organism=Citrus sinensis; type=EST; length=513bpback to top |