BQ623544

Overview
NameBQ623544
Unique NameBQ623544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: SF3B3_DICDI (Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum GN=sf3b3 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 4.838e-58
Identity = 101/164 (61.59%), Postives = 132/164 (80.49%), Query Frame = 1
Query:    4 DRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495
            DR+ VGDIQES HF KY+R EN LY+FADD  PRW+T++  +D+DT+AGADKFGNI+ +RLP  +SDE+EEDPTG K+K+E G LNGAP+K++ I  F VGD VT+L K SLV GG E ++Y T+ G++GA++ F+SR+DVDFFS LEM+MR +  PLCGRDH+
Sbjct: 1037 DRLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDYDTVAGADKFGNIFVLRLPLLISDEVEEDPTGTKLKFESGTLNGAPHKLDHIANFFVGDTVTTLNKTSLVVGGPEVILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSDCLPLCGRDHL 1200          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: SF3B3_MOUSE (Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 9.124e-57
Identity = 95/166 (57.23%), Postives = 129/166 (77.71%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMGLQ 504
            R+ V D+QESF + +Y+R+ENQL IFADD+ PRW+T A  +D+DT+AGADKFGNI  VRLP + +DE++EDPTG K  W++G LNGA  K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+  +
Sbjct:  999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFR 1164          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: SF3B3_HUMAN (Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4)

HSP 1 Score: 219.164 bits (557), Expect = 9.124e-57
Identity = 95/166 (57.23%), Postives = 129/166 (77.71%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMGLQ 504
            R+ V D+QESF + +Y+R+ENQL IFADD+ PRW+T A  +D+DT+AGADKFGNI  VRLP + +DE++EDPTG K  W++G LNGA  K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+  +
Sbjct:  999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFR 1164          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: SF3B3_BOVIN (Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 9.124e-57
Identity = 95/166 (57.23%), Postives = 129/166 (77.71%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMGLQ 504
            R+ V D+QESF + +Y+R+ENQL IFADD+ PRW+T A  +D+DT+AGADKFGNI  VRLP + +DE++EDPTG K  W++G LNGA  K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+  +
Sbjct:  999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFR 1164          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: SF3B3_DANRE (Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.914e-56
Identity = 95/166 (57.23%), Postives = 126/166 (75.90%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMGLQ 504
            R+ V D+QES  + +YRR+ENQL IFADD+ PRW+T A  +D+DTMA ADKFGNI  VRLP + SD+++EDPTG K  W++G LNGA  K E I+ +H+G+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF HLEMHMR E PPLCGRDH+  +
Sbjct:  999 RVIVSDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLDYDTMASADKFGNICVVRLPPNTSDDVDEDPTGNKALWDRGLLNGASQKAEIIINYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHLEMHMRSEFPPLCGRDHLSFR 1164          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: SF3B3_PONAB (Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.833e-55
Identity = 94/166 (56.63%), Postives = 128/166 (77.11%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMGLQ 504
            R+ V D+QESF + +Y+R+ENQL IFADD+ PRW+T A  +D+DT+AGADKFGNI  VRLP + +DE++EDPTG K   ++G LNGA  K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+  +
Sbjct:  999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALRDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFR 1164          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_CRYNE (Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans GN=RSE1 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.949e-39
Identity = 79/164 (48.17%), Postives = 111/164 (67.68%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRR-DENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495
            RI VGD+QES  +C YR     QL IFADDS PRW+T    +D++T+A  DKFGNI+  RL   +S+++++DPTG  I  E+  L GA +K E I  +++G VVTS+ K  LV GG + ++Y T+ G++GA++ F S DD++F S LEMHMR +   L GRDH+
Sbjct:  998 RIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVDYETVACGDKFGNIFINRLDPSISEKVDDDPTGATILHEKSFLMGAAHKTEMIGHYNIGSVVTSITKIPLVAGGRDVLVYTTISGAVGALVPFVSSDDIEFMSTLEMHMRTQDISLVGRDHI 1161          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_USTMA (Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis GN=RSE1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.260e-38
Identity = 77/163 (47.24%), Postives = 111/163 (68.10%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495
            RI VGD+QES  F  Y+  EN+L  FADD +P+++T    +D+DT+A ADKFGNIY +RL  + S  ++EDPTG  I  E+  L GA +K   +  F VGD++TSL + ++V GG E ++Y  + GS+GA++ F S++DVD  S LE H+RQE+  + GRDH+
Sbjct: 1002 RIVVGDMQESIIFASYKPLENRLVTFADDVMPKFVTRCTMLDYDTVAAADKFGNIYVLRLDGNTSRSVDEDPTGMTIVHEKPVLMGAAHKASLVAHFFVGDIITSLHRTAMVAGGREVLLYTGLSGSIGALVPFVSKEDVDTLSTLESHLRQENNSIVGRDHL 1164          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_ASPFU (Pre-mRNA-splicing factor rse1 OS=Aspergillus fumigatus GN=rse1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.760e-37
Identity = 70/163 (42.94%), Postives = 109/163 (66.87%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495
            RI V D++ES  +  Y+  +N L  F DDSV RW T+   +D++T+AG DKFGN++ VR P+  S+E +ED +G  +  E+G L+GAPN+++ ++  +  D+ TSL K  LV GG + +++    G++G ++ F SR+DVDFF +LEM +  + PPL GRDH+
Sbjct:  991 RIVVSDVRESVTYVVYKYQDNILIPFVDDSVSRWTTSTTMVDYETVAGGDKFGNLWLVRCPKKASEEADEDGSGAHLIHERGYLHGAPNRLDLMIHTYTQDIPTSLHKTQLVAGGRDILVWTGFQGTIGMLVPFVSREDVDFFQNLEMQLASQCPPLAGRDHL 1153          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_EMENI (Pre-mRNA-splicing factor rse1 OS=Emericella nidulans GN=rse1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.336e-36
Identity = 69/163 (42.33%), Postives = 105/163 (64.42%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495
            RI V D++ES  +  Y+  +N L  F DDS+ RW TAA  +D++T AG DKFGN++ VR P+  S+E +E+ +G  +  ++G L G PN++E ++     D+ TSL K  LV GG + +++    G++G ++ F SR+DVDFF  LEM +  + PPL GRDH+
Sbjct:  991 RIVVSDVRESVTYVVYKYQDNVLIPFVDDSIARWTTAATMVDYETTAGGDKFGNLWLVRCPKKASEEADEEGSGAHLIHDRGYLQGTPNRLELMIHVFTQDIPTSLHKTQLVAGGRDILVWTGFQGTIGILVPFVSREDVDFFQSLEMQLASQCPPLAGRDHL 1153          
The following BLAST results are available for this feature:
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SF3B3_DICDI4.838e-5861.59Probable splicing factor 3B subunit 3 OS=Dictyoste... [more]
SF3B3_MOUSE9.124e-5757.23Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf... [more]
SF3B3_HUMAN9.124e-5757.23Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF... [more]
SF3B3_BOVIN9.124e-5757.23Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B... [more]
SF3B3_DANRE5.914e-5657.23Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3... [more]
SF3B3_PONAB3.833e-5556.63Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF... [more]
RSE1_CRYNE2.949e-3948.17Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neof... [more]
RSE1_USTMA3.260e-3847.24Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis G... [more]
RSE1_ASPFU2.760e-3742.94Pre-mRNA-splicing factor rse1 OS=Aspergillus fumig... [more]
RSE1_EMENI2.336e-3642.33Pre-mRNA-splicing factor rse1 OS=Emericella nidula... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00635 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00635 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623544 ID=BQ623544; Name=BQ623544; organism=Citrus sinensis; type=EST; length=513bp
CGTGATCGAATCTATGTAGGTGACATCCAAGAGTCATTCCATTTCTGCAA
GTATAGACGGGATGAGAATCAACTCTATATTTTTGCTGACGATTCTGTTC
CAAGATGGCTCACTGCAGCACATCACATAGATTTTGACACCATGGCCGGT
GCCGACAAGTTTGGTAATATCTATTTTGTGCGACTACCACAGGATGTTTC
TGATGAGATAGAAGAAGATCCGACTGGTGGGAAGATAAAGTGGGAGCAGG
GGAAGCTTAACGGAGCTCCCAACAAGATGGAGGAGATAGTACAGTTTCAT
GTTGGTGATGTGGTCACATCCTTGCAGAAGGCATCCCTGGTTCCAGGTGG
CGGGGAGAGTGTCATTTATGGAACAGTGATGGGTAGCTTGGGAGCTATGC
TTGCATTTTCATCCCGTGATGATGTTGACTTCTTTTCTCACCTTGAGATG
CATATGAGGCAGGAACATCCACCTTTATGTGGTCGTGATCACATGGGCTT
ACAGATCAACTTA
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