BQ623546

Overview
NameBQ623546
Unique NameBQ623546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623546_ssr344 microsatellite BQ623546_ssr344:344..358. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1460 contig Csv1_Contig1460:475..1136. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623546 vs. ExPASy Swiss-Prot
Match: RBP1A_ARATH (Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.855e-41
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 1
Query:    1 LVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKTEDKSRAE 321
            LVMRQSKTLKICANH V   MSVQEH GN+KSCVWHA D+ADGELKDELFCIRF S+ENCK+FM+   EVAES+++KEE+KDA+ TAGLLEKL+VEE KTE+K+ A+
Sbjct:   87 LVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTVEETKTEEKTEAK 193          
BLAST of BQ623546 vs. ExPASy Swiss-Prot
Match: RBP1B_ARATH (Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 9.207e-41
Identity = 81/103 (78.64%), Postives = 92/103 (89.32%), Query Frame = 1
Query:    1 LVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKTEDK 309
            LVMRQSKTLKICANHLV   MSVQEHAGNDKSCVWHA D++DGELKDELFCIRF SVENCK+FM+   EVAES+++KEE+KDAS TAGLLEKL+VEE ++E K
Sbjct:   89 LVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELKDELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASDTAGLLEKLTVEEKESEKK 191          
BLAST of BQ623546 vs. ExPASy Swiss-Prot
Match: RBP1C_ARATH (Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.065e-36
Identity = 70/105 (66.67%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    1 LVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKTEDKSR 315
            LVMRQSKTLKICANHL+   MSVQEH+GN+KSC+WHA D++DGELKDELFCIRF S+ENCK+FME   E+AESQ+  +E+      AGL+E LSVEEN +E+K++
Sbjct:   86 LVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSVEENISEEKAK 190          
BLAST of BQ623546 vs. ExPASy Swiss-Prot
Match: RANG_MOUSE (Ran-specific GTPase-activating protein OS=Mus musculus GN=Ranbp1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 49/113 (43.36%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 LVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFM----EMVHEVAESQKK-KEENKDASATAGLLEKLSVEENKTEDKSRAE 321
            L+MR+ KTLKICANH + PMM ++ +AG+D++ VW+  AD+AD   K EL  IRF + EN + F     E   E+ E +KK   +N +A   A  LE LSV E + E + ++E
Sbjct:   88 LLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKGPGKNDNAEKVAEKLEALSVREAREEAEEKSE 200          
BLAST of BQ623546 vs. ExPASy Swiss-Prot
Match: RANG_HUMAN (Ran-specific GTPase-activating protein OS=Homo sapiens GN=RANBP1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.895e-15
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 LVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFM----EMVHEVAESQKK--KEENKDASATAGLLEKLSVEENKTED 306
            L+MR+ KTLKICANH + PMM ++ +AG+D++ VW+  AD+AD   K EL  IRF + EN + F     E   E+ E +KK    +N  A   A  LE LSV+E   ED
Sbjct:   88 LLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKED 196          
BLAST of BQ623546 vs. ExPASy Swiss-Prot
Match: RANG_BOVIN (Ran-specific GTPase-activating protein OS=Bos taurus GN=RANBP1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 LVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFM----EMVHEVAESQKK-KEENKDASATAGLLEKLSVEENK 297
            L+MR+ KTLKICANH + PMM ++ +AG+D++ VW+  AD+AD   K EL  IRF + EN + F     E   E+ E +KK   +N         LE LSV+E +
Sbjct:   88 LLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKQELLAIRFLNAENAQKFKTKFEECRKEIEEKEKKGSGKNDSTEKVVEKLEALSVQEGE 192          
BLAST of BQ623546 vs. ExPASy Swiss-Prot
Match: RANG_SCHPO (Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe GN=sbp1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 LVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 228
            LVMR+ KTLK+CANHL++P M +  + G+D+S VW  AAD ++GE   E F IRF + EN   F E   +  E   K
Sbjct:  134 LVMRRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAADVSEGEPTAETFAIRFANSENANLFKENFEKYQEENAK 210          
BLAST of BQ623546 vs. ExPASy Swiss-Prot
Match: YRB1_YEAST (Ran-specific GTPase-activating protein 1 OS=Saccharomyces cerevisiae GN=YRB1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 LVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 228
            ++MR+ KTLKICANH++ P  +++ + G+D+S V+   AD A+GE +   F IRFGS EN   F E   +  E  KK
Sbjct:  124 ILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINKK 200          
BLAST of BQ623546 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    1 LVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASA--TAGLLEKLSVEENKTEDKSRAEG 324
            L+MR+ + LKICANH + P M +  +AG+D+S VWHA DYAD   K E   IRF + E    F     E     K    N   +   T  ++++ + ++NK  D  +A+G
Sbjct: 1226 LLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQNILKALGTNTSTAPNHTLRIVKESATQDNK--DICKADG 1333          
The following BLAST results are available for this feature:
BLAST of BQ623546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RBP1A_ARATH1.855e-4174.77Ran-binding protein 1 homolog a OS=Arabidopsis tha... [more]
RBP1B_ARATH9.207e-4178.64Ran-binding protein 1 homolog b OS=Arabidopsis tha... [more]
RBP1C_ARATH3.065e-3666.67Ran-binding protein 1 homolog c OS=Arabidopsis tha... [more]
RANG_MOUSE1.748e-1543.36Ran-specific GTPase-activating protein OS=Mus musc... [more]
RANG_HUMAN3.895e-1544.95Ran-specific GTPase-activating protein OS=Homo sap... [more]
RANG_BOVIN7.346e-1442.86Ran-specific GTPase-activating protein OS=Bos taur... [more]
RANG_SCHPO6.875e-1246.75Ran-specific GTPase-activating protein 1 OS=Schizo... [more]
YRB1_YEAST7.602e-1144.16Ran-specific GTPase-activating protein 1 OS=Saccha... [more]
RBP2_MOUSE7.602e-1136.36E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00637 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00637 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623546 ID=BQ623546; Name=BQ623546; organism=Citrus sinensis; type=EST; length=665bp
CTCGTTATGAGGCAATCTAAGACTCTCAAGATCTGCGCCAATCATCTCGT
ATTGCCGATGATGTCCGTGCAAGAGCATGCTGGAAATGATAAGTCGTGCG
TGTGGCATGCTGCTGACTATGCTGACGGTGAATTGAAGGATGAGCTTTTC
TGCATCAGATTTGGATCCGTTGAGAATTGCAAAAGCTTTATGGAAATGGT
TCATGAAGTTGCTGAATCCCAAAAAAAGAAAGAGGAGAACAAAGATGCAT
CTGCAACTGCTGGTCTTCTTGAGAAATTGAGTGTTGAAGAAAATAAAACT
GAAGACAAATCTAGGGCAGAGGGGGAGGTGCCCAAAGAGGAGAAGGAGGA
GGAGGAGGTGCCCAAAGAGGAGAAGAAGGAATCCAAGAGTGAAGAAGCAG
AGAAGAAACCTGAGGAGCCTGCTTCCTCAACATAGAGGACTGGGGTTTGT
TTTATCACCATATGCTTGGCAATGTGAAAAGCTTTGTTAGTCGACCTTGG
TTCTCATCCATGTCTTGGCGTATAAATCCGGTGGAAATTTTGAACCAATT
TATGGGCTGTAGTGGGTTGGGGTCTGTGTCCAGTTTGAGTCTGTCGACAA
GTGGTCAAGCTCAGGTCATGTTTGCATGTTGGGGGGGTGGGGTCTTTGGA
CTTGGTTTCCTCAAA
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