BQ623550

Overview
NameBQ623550
Unique NameBQ623550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4493 contig Csv1_Contig4493:316..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623550 vs. ExPASy Swiss-Prot
Match: SYY_PARUW (Tyrosyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=tyrS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.802e-22
Identity = 47/107 (43.93%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:    1 AVKATEALRPGAETKLDWKTIEAIAEDVPSCSLAYDQVLNVSLVDLAVSAGLFESKSAARRLLKQGGVYLNNNRVDSESKRIEPQDIVDDKVLLLSAGKKNKVVVRI 321
            A+K TE + PG++T L+   +E +A D+PSC +  + VLN  L+DL V   L  SKS ARRLL+ GGVY+NN +++ E+  I  + ++  +++LL+AGKKNK+++R+
Sbjct:  316 AIKVTEGVAPGSQTSLNADILEKLAADMPSCEMKLENVLNKKLIDLLVETKLQTSKSEARRLLRNGGVYINNKKIEDENHIISVECLISSRLILLAAGKKNKMIIRL 422
The following BLAST results are available for this feature:
BLAST of BQ623550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYY_PARUW1.802e-2243.93Tyrosyl-tRNA synthetase OS=Protochlamydia amoeboph... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00641 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00641 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623550 ID=BQ623550; Name=BQ623550; organism=Citrus sinensis; type=EST; length=452bp
GCTGTTAAGGCTACTGAAGCTTTGAGGCCTGGAGCTGAGACTAAGTTGGA
TTGGAAGACCATTGAGGCTATTGCTGAGGATGTACCTTCATGCTCATTGG
CTTATGATCAAGTTCTAAATGTTTCGCTTGTTGATCTTGCAGTTTCTGCT
GGTTTGTTTGAGAGTAAATCAGCTGCCCGGCGTCTGTTGAAACAAGGCGG
GGTTTACTTGAACAATAACAGAGTGGATAGTGAGAGTAAGAGGATTGAGC
CTCAAGACATTGTGGATGACAAAGTTCTTTTGTTATCTGCTGGTAAAAAG
AACAAGGTGGTTGTACGAATAGCTTGATCCCTCTTTTATTTGGTAGCTGG
TTGTTTATTAGAAATTTGTGCCATTTATTTGATAAATAAACTTTATATTT
TACTCTCCTCGAAGAAAACATATAAGAAGCAATTTATGAAATGATTATTC
AA
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