BQ623554

Overview
NameBQ623554
Unique NameBQ623554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length279
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ623554 vs. ExPASy Swiss-Prot
Match: PSAK_HORVU (Photosystem I reaction center subunit psaK, chloroplastic OS=Hordeum vulgare GN=PSAK PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.810e-26
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    2 IGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 184
            IGS TNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLE R+SGLQTGDPAGFTLADTLAC
Sbjct:   45 IGSSTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLAC 105
[Close]
BLAST of BQ623554 vs. ExPASy Swiss-Prot
Match: PSAK_ARATH (Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.072e-25
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    2 IGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 184
            IGS TNLIMVT+TTLMLFAGRFGLAPSANRKATAGL+LE RDSGLQTGDPAGFTLADTLAC
Sbjct:   49 IGSSTNLIMVTSTTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLAC 109
[Close]
BLAST of BQ623554 vs. ExPASy Swiss-Prot
Match: PSAK_MEDSA (Photosystem I reaction center subunit psaK, chloroplastic OS=Medicago sativa GN=PSAK PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.072e-25
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 2 
Query:    2 IGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 184
            IGS TN+IMV +TTLMLFAGRFGLAPSANRKATAGLKLE RDSGLQTGDPAGFTLADTLAC
Sbjct:   49 IGSSTNVIMVASTTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLAC 109
[Close]
BLAST of BQ623554 vs. ExPASy Swiss-Prot
Match: PSAK_CHLRE (Photosystem I reaction center subunit psaK, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAK PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.708e-11
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 2 
Query:    2 IGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKL--EVRDSGLQTGDPAGFTLADTLA 181
            IGS TNLIMV +TT  L A RFGLAP+  +  TAGLKL      +G+ + DPAGFT+ D LA
Sbjct:   30 IGSSTNLIMVASTTATLAAARFGLAPTVKKNTTAGLKLVDSKNSAGVISNDPAGFTIVDVLA 91
The following BLAST results are available for this feature:
BLAST of BQ623554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAK_HORVU4.810e-2695.08Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_ARATH1.072e-2593.44Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_MEDSA4.072e-2591.80Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_CHLRE5.708e-1156.45Photosystem I reaction center subunit psaK, chloro... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00645 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00645 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623554 ID=BQ623554; Name=BQ623554; organism=Citrus sinensis; type=EST; length=279bp
CATTGGTTCGCCCACAAATTTGATAATGGTGACAACAACAACCCTGATGC
TATTTGCTGGGAGATTTGGGCTGGCTCCATCAGCAAACAGGAAAGCAACG
GCAGGATTGAAGCTTGAAGTGAGGGACTCTGGCTTGCAAACTGGTGACCC
AGCTGGGTTCACTTTGGCTGACACATTGGCTTGTGGCAGTGTTGGTCACA
TCATTGGGTGGGGGGGTGGGTCCTTGGCCTTAAGAACTTTGGGTGCTCTG
TAAAAATTTTCGAAGCAGTTTGTTATGTT
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