BQ623555

Overview
NameBQ623555
Unique NameBQ623555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623555 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.411e-14
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 3 
Query:    6 LGQLSLVDIAYIPFVERAQIFLSEVIKYDITAGRPKLAAWIEELNQVDAYKQTKLKDPKGLVELYKIR 209
            LGQ SLVDIAY+PF+ER QIF S +  YDIT GRP L  +IEE+N++ AY +TK +DP+ L+E  K R
Sbjct:  174 LGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETK-QDPQFLLEHTKKR 240
[Close]
BLAST of BQ623555 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.411e-14
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 3 
Query:    6 LGQLSLVDIAYIPFVERAQIFLSEVIKYDITAGRPKLAAWIEELNQVDAYKQTKLKDPKGLVELYKIR 209
            LGQ SLVDIAY+PF+ER QIF S +  YDIT GRP L  +IEE+N++ AY +TK +DP+ L+E  K R
Sbjct:  174 LGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETK-QDPQFLLEHTKKR 240
[Close]
BLAST of BQ623555 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.482e-13
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 3 
Query:    6 LGQLSLVDIAYIPFVERAQIFLSEVIKYDITAGRPKLAAWIEELNQVDAYKQTKLKDPKGLVELYK 203
            LGQ SLVDIAY+  +ER QI+ S + KY+IT GRP L  +IEE+N+++AY QTK  DP  L++L K
Sbjct:  173 LGQFSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTK-NDPLYLLDLAK 237
[Close]
BLAST of BQ623555 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:    6 LGQLSLVDIAYIPFVERAQIFLSEVIKYDITAGRPKLAAWIEELNQVDAYKQTKLKDPKGLVELYK 203
            LGQ SL D+AY+  +ER QI+ S +  YDI  GRP L  +I+E+N+++AY QTK  DP  L++L K
Sbjct:  173 LGQFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIEAYAQTK-NDPLFLLDLAK 237
The following BLAST results are available for this feature:
BLAST of BQ623555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IN21B_ORYSJ2.411e-1458.82Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI2.411e-1458.82Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ3.482e-1356.06Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE2.495e-1150.00Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00646 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00646 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623555 ID=BQ623555; Name=BQ623555; organism=Citrus sinensis; type=EST; length=566bp
TCCTCCTTGGCCAGCTCAGTTTGGTGGACATAGCCTATATTCCATTTGTT
GAAAGAGCCCAGATCTTCTTATCAGAAGTAATCAAGTATGACATCACAGC
AGGCAGGCCTAAATTGGCAGCATGGATTGAGGAGTTGAACCAGGTCGATG
CTTATAAGCAGACAAAATTAAAAGATCCCAAAGGGCTCGTTGAACTTTAC
AAGATCCGCTACATGTGATCTTGCACGTCGTTACCATGCTGAACAATTTG
GTGCCTTGGTGAAATCTCTCGTATAATAAAGCTGCATGTTATGAACATAT
CAAGTGCAGATGAGAGCATGTATTATAGAAGCCAGATAAGTTGGTGCAGT
ATCGTGGATTAATATCACTTGTGATAAATTAAGCTATGTTTTATGTAAAT
GTAAACCATATATGTATTTGATTGTGTGGGAGATGTGATCTTGTTGATGC
CTTCAGGTATCAGTGGTGTGTTTTGCGGTGTTTGTCGAGCTTGCATGAAC
AAATAAAATTGAAGCTACTTGAATTGTCATACTAGTTACTATGTTCATAT
TTAAAAAAAAAAAAAA
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