BQ623558

Overview
NameBQ623558
Unique NameBQ623558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623558 vs. ExPASy Swiss-Prot
Match: ARI7_ARATH (Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1)

HSP 1 Score: 436.417 bits (1121), Expect = 6.749e-122
Identity = 195/220 (88.64%), Postives = 209/220 (95.00%), Query Frame = 1
Query:    1 TEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQQGDYDETERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFL 660
            TEEAHRPVDC TV+KWILKN AESENMNWILANSKPCP+CKRPIEKNQGCMHMTC+PPCK+EFCWLCLGAW DHGERTGGFYACNRYE AKQ+G YDETERRREMAKNSLE+YTHYYERWASNQ+SRQKA+ADL Q Q  +LEKLSD QCTPESQLKFI++AWLQI+ECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQC EK+L+QFL
Sbjct:  259 TEEAHRPVDCSTVSKWILKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGAWMDHGERTGGFYACNRYEVAKQEGQYDETERRREMAKNSLERYTHYYERWASNQTSRQKAMADLQQAQMQNLEKLSDKQCTPESQLKFILEAWLQIIECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCVEKDLVQFL 478          
BLAST of BQ623558 vs. ExPASy Swiss-Prot
Match: ARI8_ARATH (Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 5.005e-117
Identity = 188/219 (85.84%), Postives = 205/219 (93.61%), Query Frame = 1
Query:    4 EEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQQGDYDETERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFL 660
            EEAHRPVDC TV+KW+LKN AESENMNWILANSKPCPKCKRPIEKNQGCMH+TC+PPCKFEFCWLCLGAW++HGE+TGGFYACNRYE AKQ G YDETE+RREMAKNSLE+YTHYYERWA+NQSSRQKAL DL +MQT  +EKLSDIQC PESQLKFII+AWLQIVECRRVLKWTYAYG+Y+P+ EH KR FFEYLQGEAESGLERLHQCAEKELL +L
Sbjct:  251 EEAHRPVDCDTVSKWVLKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWTEHGEKTGGFYACNRYEAAKQDGIYDETEKRREMAKNSLERYTHYYERWATNQSSRQKALLDLKKMQTDDIEKLSDIQCQPESQLKFIIEAWLQIVECRRVLKWTYAYGFYIPDQEHGKRVFFEYLQGEAESGLERLHQCAEKELLPYL 469          
BLAST of BQ623558 vs. ExPASy Swiss-Prot
Match: ARI5_ARATH (Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana GN=ARI5 PE=2 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 3.142e-111
Identity = 182/219 (83.11%), Postives = 197/219 (89.95%), Query Frame = 1
Query:    1 TEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQQGDYDETERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQF 657
            TEEAHRPVDC TV KWILKN AESENMNWILANSKPCPKCKRPIEKN GCMHMTC+PPCKFEFCWLCL AW++HGERTGGFYACNRYE AKQ+G YDE ERRREMAKNSLE+YTHYYERWASNQ SRQKA+ DL +MQ+  L KLSDIQCTPESQLKFI +AWLQI+ECRRVLKWTYAYGYYL   +HAK+ FFEYLQGEAESGLERLH+C EK++  F
Sbjct:  254 TEEAHRPVDCDTVGKWILKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCLNAWTEHGERTGGFYACNRYEAAKQEGLYDEAERRREMAKNSLERYTHYYERWASNQVSRQKAMGDLQKMQSEKLGKLSDIQCTPESQLKFIAEAWLQIIECRRVLKWTYAYGYYL--QDHAKKPFFEYLQGEAESGLERLHKCVEKDIEVF 470          
BLAST of BQ623558 vs. ExPASy Swiss-Prot
Match: ARI6_ARATH (Putative E3 ubiquitin-protein ligase ARI6 OS=Arabidopsis thaliana GN=ARI6 PE=5 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 2.490e-108
Identity = 175/219 (79.91%), Postives = 195/219 (89.04%), Query Frame = 1
Query:    1 TEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQQGDYDETERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQF 657
            +EEAHRPVDC TV KWILKN  ESENMNWILANSKPCPKCKRPIEKN GCMHMTC+PPCKFEFCWLCL AW++HGE +GG+YACNRYE AK+QG YDE ERRREMAKNSLEKYTHYY+RWASNQ SRQKA+ DL +MQ+  L KLSDIQCT ESQLKFI +AWLQI+ECRRVLKWTYAYGYY+P+ +H K+QFFEYLQGEAESGLERLH+C E ++  F
Sbjct:  256 SEEAHRPVDCDTVGKWILKNSTESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCLNAWTEHGESSGGYYACNRYEAAKKQGLYDEAERRREMAKNSLEKYTHYYKRWASNQVSRQKAMGDLQKMQSEKLRKLSDIQCTSESQLKFIAEAWLQIIECRRVLKWTYAYGYYVPD-DHTKKQFFEYLQGEAESGLERLHECIENDIEVF 473          
BLAST of BQ623558 vs. ExPASy Swiss-Prot
Match: ARI9_ARATH (Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana GN=ARI9 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.065e-79
Identity = 137/219 (62.56%), Postives = 166/219 (75.80%), Query Frame = 1
Query:    1 TEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQQGDYDETERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQF 657
            +E+AH PVDC TV+KWI KN  ESEN NW+LANSKPCP+CKRPIEKN GC HMTCS PC  EFCW+CL A+  H        ACNR+         ++ E +R + ++ +++YTHYY RWA NQSSR KA+ DL ++Q+V L++LSD QCT E+QL+F +DAWLQI+ECRRVLKWTYAYGYYL   +  KR+FFEYLQGEAESGLERLH CAE EL QF
Sbjct:  251 SEDAHSPVDCDTVSKWIFKNQDESENKNWMLANSKPCPECKRPIEKNDGCNHMTCSAPCGHEFCWICLKAYRRHSG------ACNRFVV-------EQAESKRALLQSEIKRYTHYYVRWAENQSSRLKAMRDLEKLQSVQLKELSDNQCTSETQLQFTVDAWLQIIECRRVLKWTYAYGYYL--QDLPKRKFFEYLQGEAESGLERLHHCAENELKQF 454          
BLAST of BQ623558 vs. ExPASy Swiss-Prot
Match: ARI10_ARATH (Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana GN=ARI10 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.286e-76
Identity = 135/219 (61.64%), Postives = 162/219 (73.97%), Query Frame = 1
Query:    1 TEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQQGDYDETERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQF 657
            +E+AH PVDC TV+KWI KN  ESEN NWILANSKPCPKCKRPIEK+ GC HMTCS  C   FCW+C  ++SDH       YACN Y    +  D+D    +R + ++ +++YTHYY RW  NQSSR KA++DL + Q+V L++LSD QC P+  L+FI+DAWLQI+ECRRVLKWTYAYGYYL     AKR  FEYLQGEAE+GLERLH CAE EL QF
Sbjct:  242 SEDAHSPVDCETVSKWIFKNQDESENKNWILANSKPCPKCKRPIEKSHGCNHMTCSASCGHRFCWICGKSYSDH-------YACNNY---VEDADHD----KRTLLQSEIKRYTHYYVRWVENQSSRLKAMSDLEKFQSVQLKQLSDNQCKPKIDLQFIVDAWLQIIECRRVLKWTYAYGYYL--DNLAKRPLFEYLQGEAETGLERLHHCAENELKQF 444          
BLAST of BQ623558 vs. ExPASy Swiss-Prot
Match: ARI11_ARATH (Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana GN=ARI11 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.778e-75
Identity = 135/224 (60.27%), Postives = 165/224 (73.66%), Query Frame = 1
Query:    4 EEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQQGDYDETERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQF-----FEYLQGEAESGLERLHQCAEKELLQFL 660
            E+AH PVDC TV+KW+LKN  ESENMNWILA +KPCPKCKRPIEKN GC HM+CS PC+  FCW CL   SDH        ACN ++   +    DET+R+R  AK+++++YTH+YERWA NQSSR KA++DL + Q+V L++LSDIQ TPE+QL F +DAWLQI+ECRRVLKWTYAYGYY+   E  KR F           EAE+GLERLH CAE+EL QF+
Sbjct:  263 EDAHSPVDCETVSKWLLKNKDESENMNWILAKTKPCPKCKRPIEKNTGCNHMSCSAPCRHYFCWACLQPLSDHK-------ACNAFKADNE----DETKRKR--AKDAIDRYTHFYERWAFNQSSRLKAMSDLEKWQSVELKQLSDIQSTPETQLSFTVDAWLQIIECRRVLKWTYAYGYYILSQERNKRVFARTFSLSCCSAEAENGLERLHHCAEEELKQFI 473          
BLAST of BQ623558 vs. ExPASy Swiss-Prot
Match: RBRA_DICDI (Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium discoideum GN=rbrA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.650e-44
Identity = 91/217 (41.94%), Postives = 132/217 (60.83%), Query Frame = 1
Query:   13 HRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQGCMHMTC---SPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQQGDYDETERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQ--CTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKEL 648
            H P  C  V KW+ K   ESEN+ W+LAN+K CP+C+ PIEKN GCMHMTC   +  C FEFCWLC G W++HG  TGG+Y CN+Y+ +K + D D+       AK  LE Y  YY R+ S++++ +  +AD  Q +  HL++   +       +  KF+++A  Q+++ RRVL+++Y YGYYL + +  +R  FEYLQ + E     L    E+ L
Sbjct:  268 HMPCPCSQVDKWLQKASDESENVTWMLANTKKCPECRSPIEKNGGCMHMTCRKNAGGCGFEFCWLCRGPWTEHGSTTGGYYNCNKYDKSKAKEDDDKAHD----AKTELEAYMFYYHRYESHRNAMK--IAD-EQRRNAHLKEQQILSKFDVRSADTKFLMEATEQLLKNRRVLQYSYVYGYYL-DKKSQERNLFEYLQEDLEKHTNLLSTQYEQSL 476          
BLAST of BQ623558 vs. ExPASy Swiss-Prot
Match: YKX2_SCHPO (Uncharacterized RING finger protein C328.02 OS=Schizosaccharomyces pombe GN=SPAC328.02 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.738e-37
Identity = 82/213 (38.50%), Postives = 120/213 (56.34%), Query Frame = 1
Query:   13 HRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQQGDYDETERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPE---SQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEK 642
            H+P  C  V  W+ K   +SE  NWI AN+K CPKC   IEKN GC HMTC   CK+EFCW+CLG W++HG     +Y CNRYE        D   + R     SLE+Y HYY R+A+++   Q A  D H++     ++++ +Q        +++F+ +A   + +CR+ LKWTYA+ YYL  +   + + FE  Q + E  +E L +  E+
Sbjct:  259 HQPTICPLVKIWLQKCQDDSETANWIHANTKECPKCSTTIEKNGGCNHMTCK-KCKYEFCWVCLGPWTEHG---NNWYTCNRYEEKSSTSARDSQSKSRA----SLERYLHYYNRFANHE---QSAKLD-HELYEHTHKRMTQMQVDSNLSWVEVQFLKNAVDILFQCRQTLKWTYAFAYYLARNN--QTEIFEDNQRDLELAVENLSELCER 457          
BLAST of BQ623558 vs. ExPASy Swiss-Prot
Match: ARI12_ARATH (Probable E3 ubiquitin-protein ligase ARI12 OS=Arabidopsis thaliana GN=ARI12 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36
Identity = 85/219 (38.81%), Postives = 119/219 (54.34%), Query Frame = 1
Query:    4 EEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQ-GCMHMTCSPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQQGDYDETERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQF 657
            E+AH PVDC T AKW+L+N               PCPKCK  I +NQ   + M C P C + FCW C   W +  E TGG      ++          +++R +M+++   +Y   YE W SN+   QK  A+L ++ T+ +++LS+ Q    SQLKFI++A LQI+ECRRVL+WTY YGYYL E E  K+   +  Q   +  +E L  C E  L  F
Sbjct:  245 EDAHSPVDCKTAAKWLLENAV-------------PCPKCKLRIPRNQDNSLKMKCLP-CNYVFCWFCHVDWIEDMEGTGGDLHFCTFDAVL-------SDQRGKMSESDSNRYEDCYENWDSNELLMQKEQANLPKLDTI-IQELSNTQLENVSQLKFILEAGLQIIECRRVLEWTYVYGYYLREDEVGKQNLLKDTQERLKKFVENLKHCLETNLQPF 441          
The following BLAST results are available for this feature:
BLAST of BQ623558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ARI7_ARATH6.749e-12288.64Probable E3 ubiquitin-protein ligase ARI7 OS=Arabi... [more]
ARI8_ARATH5.005e-11785.84Probable E3 ubiquitin-protein ligase ARI8 OS=Arabi... [more]
ARI5_ARATH3.142e-11183.11Probable E3 ubiquitin-protein ligase ARI5 OS=Arabi... [more]
ARI6_ARATH2.490e-10879.91Putative E3 ubiquitin-protein ligase ARI6 OS=Arabi... [more]
ARI9_ARATH7.065e-7962.56Probable E3 ubiquitin-protein ligase ARI9 OS=Arabi... [more]
ARI10_ARATH4.286e-7661.64Probable E3 ubiquitin-protein ligase ARI10 OS=Arab... [more]
ARI11_ARATH2.778e-7560.27Probable E3 ubiquitin-protein ligase ARI11 OS=Arab... [more]
RBRA_DICDI5.650e-4441.94Probable E3 ubiquitin-protein ligase rbrA OS=Dicty... [more]
YKX2_SCHPO8.738e-3738.50Uncharacterized RING finger protein C328.02 OS=Sch... [more]
ARI12_ARATH1.490e-3638.81Probable E3 ubiquitin-protein ligase ARI12 OS=Arab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00649 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00649 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623558 ID=BQ623558; Name=BQ623558; organism=Citrus sinensis; type=EST; length=692bp
ACTGAGGAAGCTCACCGTCCAGTGGATTGCGGCACTGTGGCAAAGTGGAT
TTTGAAGAACTGTGCCGAGTCTGAAAACATGAATTGGATACTAGCCAATT
CTAAACCTTGTCCCAAGTGCAAGCGACCGATTGAGAAAAATCAAGGGTGT
ATGCACATGACATGCTCTCCACCTTGTAAATTTGAATTTTGCTGGCTATG
CCTTGGAGCATGGTCAGATCATGGTGAGAGAACTGGTGGTTTCTATGCTT
GTAACCGTTATGAGACTGCTAAGCAACAGGGAGATTATGATGAGACTGAG
AGAAGGAGAGAGATGGCCAAAAATTCTCTGGAGAAATACACTCATTATTA
TGAACGTTGGGCGAGCAATCAATCGTCAAGGCAAAAAGCTCTGGCAGATT
TACACCAAATGCAGACTGTGCATCTTGAGAAGCTTAGTGACATCCAGTGC
ACGCCTGAGTCTCAGCTCAAGTTCATTATAGATGCGTGGCTTCAGATAGT
TGAATGTCGGAGAGTTCTGAAATGGACCTATGCTTATGGATATTACCTAC
CTGAGCACGAGCATGCCAAGAGACAGTTTTTTGAGTACCTGCAAGGTGAA
GCAGAATCGGGTTTGGAAAGGCTTCATCAATGTGCGGAGAAGGAACTACT
ACAATTCTTAACGATGAGAGCCAATCAAAGAGTTCAATGATT
back to top