BQ623573 | Citrus Genome Database

Overview


Name	BQ623573
Unique Name	BQ623573
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	364

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7096	contig	Csv1_Contig7096:646..1008.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 5.242e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 3

Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  197 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

HSP 2 Score: 31.5722 bits (70), Expect = 5.242e-35
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2

Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  185 YPGGSFDPLGLADDPEAF 202

[Close]

BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.897e-35
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 3

Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  191 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255

HSP 2 Score: 31.5722 bits (70), Expect = 8.897e-35
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2

Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  179 YPGGSFDPLGLADDPEAF 196

[Close]

BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.934e-35
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 3

Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  142 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206

HSP 2 Score: 31.5722 bits (70), Expect = 8.934e-35
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2

Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  130 YPGGSFDPLGLADDPEAF 147

[Close]

BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.158e-34
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 3

Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  203 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 31.5722 bits (70), Expect = 1.158e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2

Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  191 YPGGSFDPLGLADDPEAF 208

[Close]

BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.158e-34
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 3

Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  201 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 30.4166 bits (67), Expect = 1.158e-34
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = 2

Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGG+FDPLGLA  P  F
Sbjct:  189 YPGGAFDPLGLADDPEAF 206

[Close]

BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.508e-34
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 3

Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  203 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 31.5722 bits (70), Expect = 1.508e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2

Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  191 YPGGSFDPLGLADDPEAF 208

[Close]

BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.508e-34
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 3

Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  203 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 31.5722 bits (70), Expect = 1.508e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2

Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  191 YPGGSFDPLGLAEDPEAF 208

[Close]

BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.508e-34
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 3

Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  202 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 31.5722 bits (70), Expect = 1.508e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2

Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  190 YPGGSFDPLGLADDPEAF 207

[Close]

BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.508e-34
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 3

Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  203 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 31.5722 bits (70), Expect = 1.508e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2

Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  191 YPGGSFDPLGLAEDPEAF 208

[Close]

BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.509e-34
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 3

Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  201 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 31.5722 bits (70), Expect = 1.509e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2

Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  189 YPGGSFDPLGLAEDPEAF 206

The following BLAST results are available for this feature:

BLAST of BQ623573 vs. ExPASy Swiss-Prot

BLAST of BQ623573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
CB22_ORYSJ	5.242e-35	100.00	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_CUCSA	8.897e-35	98.46	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB22_CUCSA	8.934e-35	98.46	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB25_PETSP	1.158e-34	98.46	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]
CB21_ORYSJ	1.158e-34	100.00	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB2G_SOLLC	1.508e-34	98.46	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]
CB24_TOBAC	1.508e-34	98.46	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB24_PETSP	1.508e-34	98.46	Chlorophyll a-b binding protein 25, chloroplastic ...	[more]
CB23_NICPL	1.508e-34	98.46	Chlorophyll a-b binding protein C, chloroplastic O...	[more]
CB22_TOBAC	1.509e-34	98.46	Chlorophyll a-b binding protein 21, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00664 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00664 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623573 ID=BQ623573; Name=BQ623573; organism=Citrus sinensis; type=EST; length=364bp
GTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCGTGATGACCCGGAG
GCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTAT
GTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGAC
CGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAATGCC
TGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAA
CATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATGTGAC
TCTATTTCAACTTGCAAAACATGTGAATTATGTAATGTACTGCTACTACC
AGTTTGAGGGGATT