BQ623577

Overview
NameBQ623577
Unique NameBQ623577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig29 contig Csv1_Contig29:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623577 vs. ExPASy Swiss-Prot
Match: UP12_ORYSJ (Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33
Identity = 66/117 (56.41%), Postives = 90/117 (76.92%), Query Frame = 3
Query:  294 SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAP 644
            S  + D +P P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V  + + K  K  IT+L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G  FG + P
Sbjct:   67 SSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPP 183          
BLAST of BQ623577 vs. ExPASy Swiss-Prot
Match: UP12_ORYSI (Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_027381 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33
Identity = 66/117 (56.41%), Postives = 90/117 (76.92%), Query Frame = 3
Query:  294 SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAP 644
            S  + D +P P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V  + + K  K  IT+L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G  FG + P
Sbjct:   67 SSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPP 183          
The following BLAST results are available for this feature:
BLAST of BQ623577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UP12_ORYSJ9.399e-3356.41Unknown protein DS12 from 2D-PAGE of leaf, chlorop... [more]
UP12_ORYSI9.399e-3356.41Unknown protein DS12 from 2D-PAGE of leaf, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00668 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00668 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623577 ID=BQ623577; Name=BQ623577; organism=Citrus sinensis; type=EST; length=672bp
TGCCAGTGGCACTGCTCTCTCCAGCTACGAGAAAGGCCCGAAAGCTCTTC
TTCAATTCGATGGCTTTTACAGCTACTCATTTATTCTCTTCTACGGCGTC
GTCTTCTTCGACTGCTCTCCATCGATCTAAATTCCTTGATTCCGATTTTG
CCGCTCCGTTTTCTCATGATTCATTTCATCTCATTAACTTCTCCCGCAGA
TTTTACGAACAAGGAATTTGTCTTTCGAGAAAAAAGAATATTTTGTTTGC
CTCTGTCAACGGTACGAATGCTGTGAGTCCAACCCCCTTGAAATCGGACC
AAGATGCTGATTACATTCCGATGCCACATGTTCTGATAGACCAGGATTCG
AATTCTGATGCAACAATTGTGCAACTCAGTTTTGGAGATCGTCTTGGAGC
TCTCATTGACACGATGAATGCCCTGAAAGACTTGGGATTGGACGTGGCTA
AGGGAACTGTTAATACTGAAGGGTCAGTCAAACAGACAAAATTTTTCATA
ACACGATTAGACACCGGGCGCAAAGTTGAAGATCCTGACTTGCTAGAGAG
AATTCGACTTACCATCATTAACAATCTTTTGAAGTATCATCCAGAATCTA
GCGAGCAACTTGCCATGGGCGAGGCTTTCGGGATAAAAGCTCCAGAGAAA
AGCTTGATGTTGATATTGCCCA
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