BQ623578 | Citrus Genome Database

Overview


Name	BQ623578
Unique Name	BQ623578
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	429

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7096	contig	Csv1_Contig7096:716..1144.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.156e-25
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.156e-25
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.156e-25
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  212 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.156e-25
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  208 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

[Close]

BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.156e-25
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  212 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.972e-25
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  221 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

[Close]

BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.972e-25
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  225 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

[Close]

BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.972e-25
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  225 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

[Close]

BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.972e-25
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  212 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.972e-25
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  153 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206

The following BLAST results are available for this feature:

BLAST of BQ623578 vs. ExPASy Swiss-Prot

BLAST of BQ623578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67


Match Name	E-value	Identity	Description
CB24_TOBAC	1.156e-25	100.00	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB23_NICPL	1.156e-25	100.00	Chlorophyll a-b binding protein C, chloroplastic O...	[more]
CB22_TOBAC	1.156e-25	100.00	Chlorophyll a-b binding protein 21, chloroplastic ...	[more]
CB22_ORYSJ	1.156e-25	100.00	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_ORYSJ	1.156e-25	100.00	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB2B_PINSY	1.972e-25	98.15	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB2A_PYRPY	1.972e-25	98.15	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB2A_PINSY	1.972e-25	98.15	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]
CB29_MAIZE	1.972e-25	98.15	Chlorophyll a-b binding protein M9, chloroplastic ...	[more]
CB22_CUCSA	1.972e-25	98.15	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00669 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00669 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623578 ID=BQ623578; Name=BQ623578; organism=Citrus sinensis; type=EST; length=429bp
AAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTT
CGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACC
ACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCAACTTT
GTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATTGG
AATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAACA
TGTGAATTATGTAATGTACTGCTACTACTAGTTTGAGGGGATTGTATTTT
CATTCAATCTCTTGTCGCACGGTTCTAGTTCTAGTTCCTCCTCCTTACAG
GTTGTGCCAGAATCTAGTTACAAGTTTACATCAACAAAATCTCCAATATG
TTCCCTTTTAAAAAAAAAAAAAAAAAAAA