BQ623580

Overview
NameBQ623580
Unique NameBQ623580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2384 contig Csv1_Contig2384:538..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM_EUCGU (Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 6.315e-30
Identity = 68/89 (76.40%), Postives = 68/89 (76.40%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            TYNEKKL GVTTLDVVRAKTFY                  HAGITILPLFSQA PKANLADEDIKALTKRTQDGGTEVVE KAGKGSAT
Sbjct:  170 TYNEKKLLGVTTLDVVRAKTFYAGKAKVPVEEVNVPVVGGHAGITILPLFSQAVPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT 258          

HSP 2 Score: 22.3274 bits (46), Expect = 6.315e-30
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  270 LSMAYAGAIF 299
            LSMAYAGA+F
Sbjct:  259 LSMAYAGALF 268          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.541e-28
Identity = 65/88 (73.86%), Postives = 68/88 (77.27%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            Y+EKKLFGVTTLDVVRAKTFY                  HAGITILPLFSQATPKANL+D+ IKALTKRTQDGGTEVVE KAGKGSAT
Sbjct:  163 YDEKKLFGVTTLDVVRAKTFYAGKAGVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDDYIKALTKRTQDGGTEVVEAKAGKGSAT 250          

HSP 2 Score: 22.3274 bits (46), Expect = 2.541e-28
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  270 LSMAYAGAIF 299
            LSMAYAGA+F
Sbjct:  251 LSMAYAGALF 260          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM_CITLA (Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.604e-28
Identity = 64/89 (71.91%), Postives = 68/89 (76.40%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            TY+EKKLFGVTTLDVVRAKTFY                  HAGITILPLFSQATP+ANL+D+ I ALTKRTQDGGTEVVE KAGKGSAT
Sbjct:  170 TYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAGITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSAT 258          

HSP 2 Score: 22.3274 bits (46), Expect = 5.604e-28
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  270 LSMAYAGAIF 299
            LSMAYAGA+F
Sbjct:  259 LSMAYAGALF 268          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.387e-27
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            TY+EKKLFGVTTLDVVRA+TFY                  HAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTEVVE KAGKGSAT
Sbjct:  165 TYDEKKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTEVVEAKAGKGSAT 253          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.081e-25
Identity = 59/88 (67.05%), Postives = 66/88 (75.00%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            Y+EKKLFGVTTLDVVRA+TFY                  HAG+TILPLFSQATP+ANL+ + + ALTKRTQDGGTEVVE KAGKGSAT
Sbjct:  166 YDEKKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAKAGKGSAT 253          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM_CHLRE (Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.725e-23
Identity = 55/88 (62.50%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            Y+++K+ GVTTLDVVRAKTFY                  HAG+TILPLFSQATPKA ++ E + ALTKRTQDGGTEVV+ KAGKGSAT
Sbjct:  198 YDKRKVMGVTTLDVVRAKTFYAEKNGLDVASVDVPVVGGHAGVTILPLFSQATPKATMSAEVLDALTKRTQDGGTEVVQAKAGKGSAT 285          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.002e-22
Identity = 54/88 (61.36%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            Y+EKKLFGVTTLDVVR KT Y                  HAG+TILPLFSQATP+A L+ + +   TKRTQDGGTEV E KAGKGSAT
Sbjct:  166 YDEKKLFGVTTLDVVRVKTSYAGKANVPVAEVNVPAIVGHAGVTILPLFSQATPQAILSGDALTVTTKRTQDGGTEVEEAKAGKGSAT 253          

HSP 2 Score: 22.3274 bits (46), Expect = 5.002e-22
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  270 LSMAYAGAIF 299
            LSMAYAGA+F
Sbjct:  254 LSMAYAGALF 263          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.850e-18
Identity = 49/98 (50.00%), Postives = 56/98 (57.14%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y+ KKLFGVTTLDVVRA TF                   HAGITILPL S+  P  N  DE+I+ LT R Q+ GTEVV+ KAG GSAT       + F
Sbjct:  219 YDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSMAYAAARF 316          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.862e-18
Identity = 49/99 (49.49%), Postives = 55/99 (55.56%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            TY+ K+L GVTTLDVVRA TF                   HAG+TILPL SQ  P  +   E+I  LT R Q+GGTEVVE KAG GSAT       S F
Sbjct:  180 TYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKF 278          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.413e-17
Identity = 46/89 (51.69%), Postives = 54/89 (60.67%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            TY+ KKL GVTTLDV RA TF                   HAG+TILPL SQ  P ++   ++I+ LT R Q+GGTEVVE KAG GSAT
Sbjct:  178 TYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGSAT 266          
The following BLAST results are available for this feature:
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
MDHM_EUCGU6.315e-3076.40Malate dehydrogenase, mitochondrial OS=Eucalyptus ... [more]
MDHM_FRAAN2.541e-2873.86Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHM_CITLA5.604e-2871.91Malate dehydrogenase, mitochondrial OS=Citrullus l... [more]
MDHM2_ARATH4.387e-2769.66Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHM1_ARATH1.081e-2567.05Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHM_CHLRE1.725e-2362.50Malate dehydrogenase, mitochondrial OS=Chlamydomon... [more]
MDHM_BRANA5.002e-2261.36Malate dehydrogenase, mitochondrial OS=Brassica na... [more]
MDHP_ARATH2.850e-1850.00Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHG_ORYSJ4.862e-1849.49Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG1_ARATH2.413e-1751.69Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00671 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00671 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623580 ID=BQ623580; Name=BQ623580; organism=Citrus sinensis; type=EST; length=301bp
GACATACAATGAGAAGAAGCTGTTTGGTGTGACCACTCTTGATGTGGTTA
GGGCTAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCAGAGGTT
AATGTGCCTGTTGTTGGTGGTCATGCTGGTATAACAATTCTCCCGCTATT
TTCTCAGGCCACACCAAAGGCCAATTTGGCAGATGAAGATATTAAGGCTC
TTACAAAGAGAACCCAAGATGGTGGGACAGAAGTTGTGGAAACAAAGGCT
GGAAAGGGTTCTGCAACATTTGTCAATGGCTTATGCAGGAGCCATTTTTG
C
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