BQ623581

Overview
NameBQ623581
Unique NameBQ623581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623581_ssr35 microsatellite BQ623581_ssr35:35..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig30 contig Csv1_Contig30:1..527. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U497_GOSHI (UPF0497 membrane protein f16 OS=Gossypium hirsutum GN=F16 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.828e-45
Identity = 95/154 (61.69%), Postives = 113/154 (73.38%), Query Frame = 2
Query:   68 MEKSNNIGG-AVAASSPLPMMGSRAHQEINEDGNAALRTAEPIARXXXXXXXXXXXXXXXKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGS 526
            MEKS    G A A  SP+ +MGS  ++  N++ N ++RTAE + R               KNS+++DFGS+SYSDLGAFRYLVHANGICAGYSLLSAIIAA+P PSTM +AWTFF LDQ+LTY+IL A AVSTEVLYL  KGD AITWSA CG+
Sbjct:    1 MEKSEKGNGVAPATRSPMALMGSSRNE--NQEVNTSMRTAETMLRLVPMALGVAALVVMLKNSQSNDFGSVSYSDLGAFRYLVHANGICAGYSLLSAIIAAVPSPSTMPRAWTFFLLDQILTYVILGAAAVSTEVLYLANKGDSAITWSAACGT 152          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U497G_RICCO (UPF0497 membrane protein 16 OS=Ricinus communis GN=RCOM_0477780 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 9.429e-44
Identity = 92/153 (60.13%), Postives = 110/153 (71.90%), Query Frame = 2
Query:   68 MEKSNNIGGAVAASSPLPMMGSRAHQEINEDGNAALRTAEPIARXXXXXXXXXXXXXXXKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGS 526
            M+KS  +  AV   +P+ ++      E+    + ++RTAE + R               KNS+T+DFG+LSYSDLGAFRYLVHANGICAGYSLLSAII AMPRPSTMS+AWTFFFLDQ+LTY+ILAA AVS E LYL RKGD+AITWSA C S
Sbjct:    1 MDKSK-VSTAVGGETPVGLITGSRDDELE---SGSMRTAETVLRLVPMAFCISALVLMLKNSQTNDFGTLSYSDLGAFRYLVHANGICAGYSLLSAIIVAMPRPSTMSRAWTFFFLDQVLTYVILAAAAVSVEALYLARKGDIAITWSAACVS 149          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U497B_VITVI (UPF0497 membrane protein 11 OS=Vitis vinifera GN=GSVIVT00035166001 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.966e-41
Identity = 90/142 (63.38%), Postives = 103/142 (72.54%), Query Frame = 2
Query:  104 ASSPLPMMGSRAHQEINEDGN-AALRTAEPIARXXXXXXXXXXXXXXXKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGS 526
            ASSP+ +       E +E GN +++RT E + R               KNS+T+DFGSLSYSDLGAFRYLVHANGICAGYSLLSAI  AMPRP TMS+AWTFF LDQ+LTYLILAAGAVSTEV+YL  KGD A+TWS  C S
Sbjct:   13 ASSPIEL----GCGEGDESGNKSSMRTVETLLRLVPVALCTVSLVVMLKNSQTNDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIFTAMPRPPTMSRAWTFFLLDQVLTYLILAAGAVSTEVVYLAYKGDEAVTWSDACSS 150          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U497F_SOYBN (UPF0497 membrane protein 15 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.174e-40
Identity = 86/153 (56.21%), Postives = 103/153 (67.32%), Query Frame = 2
Query:   68 MEKSNNIGGAVAASSPLPMMGSRAHQEINEDGNAALRTAEPIARXXXXXXXXXXXXXXXKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGS 526
            MEK + +  AV  S   PM       E+  +  +ALRTAE   R               K+S+ +++GS+ YSDLGAFRYLVHANGICAGYSL SA+IAAMP PST+ +AWTFF LDQ+LTY+ILAAGAVSTEVLYL   GD A TWS+ CGS
Sbjct:    2 MEKGSVVEAAVTRS---PMQMKMGDHELEGNTTSALRTAETFLRLFPVGLCVSALVLMLKSSQQNEYGSVDYSDLGAFRYLVHANGICAGYSLFSAVIAAMPCPSTIPRAWTFFLLDQVLTYIILAAGAVSTEVLYLAENGDAATTWSSACGS 151          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U4973_ARATH (UPF0497 membrane protein At1g17200 OS=Arabidopsis thaliana GN=At1g17200 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 7.236e-36
Identity = 88/154 (57.14%), Postives = 102/154 (66.23%), Query Frame = 2
Query:   68 MEKSNNIGGAVAASSPLPMMGSRAHQEINEDGNAALRTAEPIARXXXXXXXXXXXXXXXKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPR-PSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGS 526
            MEKSN+   A    S     G  A ++  E+ +  +RTAE + R               K+SET++FGS+SYS+L AFRYLVHANGICAGYSLLSA IAAMPR  STM + WTFF LDQLLTYL+LAAGAVS EVLYL   GD AITWS  C S
Sbjct:    1 MEKSNDHDKASHGGS-----GGGATEKW-EETSLGIRTAETMLRLAPVGLCVAALVVMLKDSETNEFGSISYSNLTAFRYLVHANGICAGYSLLSAAIAAMPRSSSTMPRVWTFFCLDQLLTYLVLAAGAVSAEVLYLAYNGDSAITWSDACSS 148          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U497G_SOYBN (UPF0497 membrane protein 16 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.412e-31
Identity = 67/118 (56.78%), Postives = 81/118 (68.64%), Query Frame = 2
Query:  173 LRTAEPIARXXXXXXXXXXXXXXXKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGS 526
            LR  E   R               KNS+ + +GS+SY+DLGAFRYLVHANGICAGYSL SAI  A+PR S++  AWTFF LDQ+LTY+IL+AGA S EVLYL  KG++A  WS+ C S
Sbjct:   35 LRVVETFLRLFPIGLCVTALVIMLKNSQENKYGSVSYTDLGAFRYLVHANGICAGYSLFSAIFVALPRLSSVHIAWTFFVLDQVLTYIILSAGAASAEVLYLAEKGNMATAWSSACRS 152          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U497C_ORYSJ (UPF0497 membrane protein Os04g0281900 OS=Oryza sativa subsp. japonica GN=Os04g0281900 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.945e-29
Identity = 62/133 (46.62%), Postives = 83/133 (62.41%), Query Frame = 2
Query:  125 MGSRAHQEINEDGNAALRTAEPIARXXXXXXXXXXXXXXXKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCG 523
            M S    + +    A +R  E + R               +NS T+++G++SYSDLG F+YLV+ANG+CA YSL SA   A+PRP+T+S++W  F LDQ+ TYLILAAGA S E+LYL   GD  +TWS  CG
Sbjct:   20 MQSSGDLQASSAAAARVRPVETLLRAAPLGLCVAAMAIMLRNSVTNEYGTVSYSDLGGFKYLVYANGLCAAYSLASAFYIAVPRPATLSRSWVVFLLDQVFTYLILAAGAASAELLYLAYNGDKEVTWSEACG 152          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U4977_MAIZE (UPF0497 membrane protein 7 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.119e-28
Identity = 62/146 (42.47%), Postives = 89/146 (60.96%), Query Frame = 2
Query:   86 IGGAVAASSPLPMMGSRAHQEINEDGNAALRTAEPIARXXXXXXXXXXXXXXXKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCG 523
            +GGA AA +       +      E   A +R  E + R               +N +++++G+++YSDLG F+YLV+ANG+CA YSL+SA   A+PRP+T+S++W  F LDQ+ TYLILAAGA + E+LYL   GD  +TWS  CG
Sbjct:   15 LGGAGAADA-----AQQQQLAAGEAAAARVRPVETLLRAAPLGLCVAAMTVMLRNQQSNEYGAVAYSDLGGFKYLVYANGLCAAYSLVSAFYTAVPRPATVSRSWLVFLLDQVFTYLILAAGAAAAELLYLAYNGDKEVTWSEACG 155          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U497D_SORBI (UPF0497 membrane protein Sb06g005640 OS=Sorghum bicolor GN=Sb06g005640 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  101 AASSPLPMMGSRAHQEINEDGNAALRTAEPIARXXXXXXXXXXXXXXXKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCG 523
            AA   L   G+       E   A +R  E + R               ++ +++++G+++YSDLG F+YLV+ANG+CA YSL+SA   A+PRP+T+S++W  F LDQ+ TYLILAAGA + E+LYL   GD  +TWS  CG
Sbjct:   10 AAVDGLGGAGAADAAPAGEAAAARVRPVETLLRAAPLGLCVAAMTVMLRDQQSNEYGTVAYSDLGGFKYLVYANGLCAAYSLVSAFYTAVPRPATVSRSWVVFLLDQVFTYLILAAGAAAAELLYLAYNGDKEVTWSEACG 150          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U4978_MAIZE (UPF0497 membrane protein 8 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.473e-28
Identity = 64/150 (42.67%), Postives = 92/150 (61.33%), Query Frame = 2
Query:   86 IGGAVAASSPLPMMGSRAHQEINEDGNAAL----RTAEPIARXXXXXXXXXXXXXXXKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCG 523
            +GGA AA +        A Q+    G+AA+    R  E + R               ++ +++++G+++YSDLG F+YLV+ANG+CA YSL SA   A+PRP+T+S++W  F LDQ+ TYLILAAGA + E+LYL   GD  +TWS  CG
Sbjct:   10 LGGARAADA--------AQQQQLAAGDAAVARAARPIETLLRAAPLVLCVAAMTLMLRDQQSNEYGTVAYSDLGGFKYLVYANGLCAAYSLASAFYTAVPRPATVSRSWVVFLLDQVFTYLILAAGAAAAELLYLAYNGDKEVTWSEACG 151          
The following BLAST results are available for this feature:
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
U497_GOSHI3.828e-4561.69UPF0497 membrane protein f16 OS=Gossypium hirsutum... [more]
U497G_RICCO9.429e-4460.13UPF0497 membrane protein 16 OS=Ricinus communis GN... [more]
U497B_VITVI1.966e-4163.38UPF0497 membrane protein 11 OS=Vitis vinifera GN=G... [more]
U497F_SOYBN2.174e-4056.21UPF0497 membrane protein 15 OS=Glycine max PE=2 SV... [more]
U4973_ARATH7.236e-3657.14UPF0497 membrane protein At1g17200 OS=Arabidopsis ... [more]
U497G_SOYBN1.412e-3156.78UPF0497 membrane protein 16 OS=Glycine max PE=2 SV... [more]
U497C_ORYSJ2.945e-2946.62UPF0497 membrane protein Os04g0281900 OS=Oryza sat... [more]
U4977_MAIZE1.119e-2842.47UPF0497 membrane protein 7 OS=Zea mays PE=2 SV=1[more]
U497D_SORBI7.253e-2842.55UPF0497 membrane protein Sb06g005640 OS=Sorghum bi... [more]
U4978_MAIZE9.473e-2842.67UPF0497 membrane protein 8 OS=Zea mays PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00672 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00672 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623581 ID=BQ623581; Name=BQ623581; organism=Citrus sinensis; type=EST; length=527bp
CAATTGGCTGAGCTAGCTCGATTGAGACAACAATAACAACAACAACAAAC
AGCAGTAGTTGGTGCACATGGAGAAGAGTAATAATATTGGTGGTGCAGTT
GCTGCAAGCTCTCCTCTGCCAATGATGGGATCGAGGGCTCATCAAGAGAT
CAATGAGGATGGCAACGCTGCCTTGCGCACAGCTGAGCCCATTGCACGTT
TGGTGCCAATGGCTCTCTGTGTTGCTGCACTTGTGCTCATGCTTAAGAAC
TCTGAGACTAGTGACTTTGGCTCTCTTTCTTACTCCGACCTTGGAGCCTT
CAGGTATTTAGTGCATGCCAATGGCATTTGTGCAGGCTATTCGCTTCTTT
CAGCAATTATTGCAGCCATGCCTCGTCCCTCCACCATGTCTCAAGCCTGG
ACTTTCTTTTTCCTTGATCAGTTGCTCACTTACTTGATTCTGGCGGCTGG
AGCCGTGTCGACGGAGGTGCTGTACCTGGAACGCAAGGGAGATTTAGCCA
TCACTTGGAGCGCAGTCTGTGGTTCAT
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