BQ623585

Overview
NameBQ623585
Unique NameBQ623585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12212 contig Csv1_Contig12212:799..1206. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623585 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.337e-18
Identity = 51/114 (44.74%), Postives = 71/114 (62.28%), Query Frame = 3 
Query:   42 DYTVQDQNELTSMETE---IETFLSSPVDNESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGD--PEEVVVKDQSEAEVELEDLVATPTDWGEELQDLVDQMGYL 368
            D  +   + L   E E   IE   S+ +DNESSS++      SV   +G +   V + IWE+ +++DLI+GD   EEVVV +Q E +VE+EDLV    +WGEELQDLVDQ+G+L
Sbjct:  241 DQPMNYSSSLQESEAELASIEMLFSAAMDNESSSNV---RPDSVVTANGTDMEPVADDIWEELLSEDLISGDRAAEEVVVVEQPEFDVEVEDLVVKTPEWGEELQDLVDQLGFL 351
The following BLAST results are available for this feature:
BLAST of BQ623585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HSF30_SOLPE8.337e-1844.74Heat shock factor protein HSF30 OS=Solanum peruvia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00676 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00676 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623585 ID=BQ623585; Name=BQ623585; organism=Citrus sinensis; type=EST; length=408bp
TTTCCGTGGCACCTGTGGGTCTGGATTGTGGTCCGGTTGTAGATTACACA
GTCCAAGATCAAAATGAATTGACCTCCATGGAAACTGAGATAGAGACGTT
TCTTTCTTCGCCGGTGGACAACGAATCAAGCAGTGATATCGACAACCCAA
ATGCTGGTTCAGTACCTGCCCCAAGTGGTGGCAATTTCAGTAGTGTCAAT
GAGACAATATGGGAGGATTTTATGGCTGACGATCTGATTGCCGGCGATCC
GGAAGAAGTGGTGGTGAAGGATCAGTCAGAGGCTGAGGTGGAATTGGAGG
ATTTGGTTGCAACACCTACAGATTGGGGTGAGGAATTGCAAGACCTAGTA
GATCAGATGGGTTATCTCAGGTGACAAACTATTGCTGCACAGAATTGTTG
AAAGACTT
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