BQ623615

Overview
NameBQ623615
Unique NameBQ623615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623615 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.248e-13
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  174 LFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG---------SKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFSLSLHFSFC 473
            LF+     TTLLLW ++F+NAFSYYG VLLT++L      CG         +K   A +      Y+D+  T+ +E PG++++  I+D++GRK +M L F +   FSFC
Sbjct:  308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVI---FSFC 413          
BLAST of BQ623615 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.248e-13
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  174 LFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG---------SKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFSLSLHFSFC 473
            LF+     TTLLLW ++F+NAFSYYG VLLT++L      CG         +K   A +      Y+D+  T+ +E PG++++  I+D++GRK +M L F +   FSFC
Sbjct:  308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVI---FSFC 413          
BLAST of BQ623615 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  174 LFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG---------SKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFSLSLHFSFC 473
            LF+     TTLLLW ++F+NAFSYYG VLLT++L      C          +K   A +      Y+D+  T+ +E PG++++  I+D++GRK +M L F +   FSFC
Sbjct:  308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVV---FSFC 413          
BLAST of BQ623615 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.801e-12
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 3
Query:  174 LFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG-SKVLHADKSKDNSL--------YVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFSLSLHFSF 470
            LFS +   TTLLLW ++F+NAFSYYG VLLT++L      C  S    A K K +          Y D+  T+ +E PGL+++  I+D++GRK +M + F +   FSF
Sbjct:  308 LFSPQFRCTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFII---FSF 412          
BLAST of BQ623615 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  174 LFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG---------SKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFSLSLHFSFC 473
            LF+     TTLLLW ++F+NAFSYYG VLLT++L      C          +K   A +      Y+D+  T+ +E PG++++  ++D++GRK +M L F +   FS C
Sbjct:  308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVI---FSLC 413          
BLAST of BQ623615 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  174 LFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG---------SKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFSLSLHFSFC 473
            LF+     TTLLLW ++F+NAFSYYG VLLT++L      C          +K   A +      Y+D+  T+ +E PG++++  ++D++GRK +M L F +   FS C
Sbjct:  308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFII---FSLC 413          
BLAST of BQ623615 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 50/162 (30.86%), Postives = 74/162 (45.68%), Query Frame = 3
Query:    3 LEKMAFVNRTKLPPGILVSDKAIKENEESSLLRDTHMISMTRKITDKLKSGFSSFFTLFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKC------GSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFSLSLHFSF 470
            L+  A +NR +LP G LVS  + K   ES                            L S  L +TT+LLW ++   AFSYYG VL T+ L     +C          +   +    S Y D+  T+ AE PGLI++ +I++  GRK +M L +++   F+F
Sbjct:  277 LQAAARMNRVQLPTGRLVS--STKAGSESR----------------------GDIANLLSPDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTF 414          
The following BLAST results are available for this feature:
BLAST of BQ623615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SVOP_PONAB1.248e-1339.45Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_HUMAN1.248e-1339.45Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_BOVIN8.086e-1338.53Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
SVOP_XENLA1.801e-1240.74Synaptic vesicle 2-related protein OS=Xenopus laev... [more]
SVOP_RAT4.013e-1236.70Synaptic vesicle 2-related protein OS=Rattus norve... [more]
SVOP_MOUSE4.013e-1236.70Synaptic vesicle 2-related protein OS=Mus musculus... [more]
YOU1_CAEEL8.940e-1230.86Putative transporter ZK637.1 OS=Caenorhabditis ele... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00706 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00706 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623615 ID=BQ623615; Name=BQ623615; organism=Citrus sinensis; type=EST; length=517bp
TTCTCGAGAAGATGGCTTTTGTCAACCGAACAAAACTCCCACCCGGCATT
CTTGTTTCTGATAAAGCAATTAAAGAGAACGAAGAATCAAGTTTATTGCG
AGATACACATATGATCTCAATGACAAGAAAGATCACCGACAAGTTAAAGT
CTGGCTTCTCATCATTTTTTACGCTTTTCTCAAGAAAATTAATTCGGACA
ACTCTTCTCCTATGGGTGTTATTCTTTGCAAATGCTTTCTCATATTATGG
CGCTGTCTTGTTGACCTCTAAGCTAAGCAGTGGAGACAGTAAATGCGGCT
CAAAAGTCTTGCATGCTGACAAGTCGAAAGATAATAGCCTGTATGTCGAT
GTGTTTATCACTAGTTTTGCAGAGCTTCCTGGGCTTATCTTGTCAGCAAT
AATAGTGGACAAAATTGGCCGCAAGCTTTCCATGGTTCTTATGTTTAGTC
TTAGCTTGCATTTTTCCTTCTGCCACTGGTCTTCCATCAGTCTGCTGTAG
TAACTACGGGTGTTACT
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