BQ623620

Overview
NameBQ623620
Unique NameBQ623620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ623620 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.034e-20
Identity = 46/136 (33.82%), Postives = 83/136 (61.03%), Query Frame = 3 
Query:    3 LFLLLSCSAAGSKHGHDEPHDLVRSSCAHASYPAVCLRTLSSF-KGAAETPRDLAQAAVNVSLSRASKVSAYLSQVSSDVNKGKSTNKRERLALSDCVEQISDSVEDLSKTLNELK---HLKGDTFSWQMSNAETW 398
            L +L + SAA +       +  +++SC   +YPAVC ++LS++ K     P++LA  A+ VSL+R  +   ++ ++    NK K    R+  A+ DC+E++ DS++ +S++ +E+K   H KG+ F+++MSN ETW
Sbjct:   14 LVILAAASAAPA-------NQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRL----NKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETW 138

HSP 2 Score: 31.187 bits (69), Expect = 8.034e-20
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = 1 
Query:  412 LTDEDTCLDGF--EXXXXXXXXXXXRKIGNVARVTSNALYML 531
            LTDE TC+DGF  +            ++  VARVTSNAL ++
Sbjct:  143 LTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALV 184
The following BLAST results are available for this feature:
BLAST of BQ623620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA8.034e-2033.8221 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00711 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00711 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623620 ID=BQ623620; Name=BQ623620; organism=Citrus sinensis; type=EST; length=581bp
CACTCTTTCTGCTACTCTCCTGCTCTGCCGCCGGAAGCAAGCACGGTCAC
GATGAGCCGCATGATCTGGTCCGTTCATCATGCGCACACGCCAGCTACCC
TGCCGTGTGCCTCCGCACGCTATCGTCCTTCAAGGGCGCAGCGGAGACCC
CACGCGATTTAGCCCAAGCGGCTGTGAATGTCAGCCTTTCTCGTGCGAGC
AAAGTGTCCGCTTACCTGTCGCAAGTCTCGTCCGACGTCAACAAAGGGAA
GAGCACGAACAAGCGAGAGCGACTTGCGCTGAGTGACTGCGTCGAGCAGA
TTTCCGACTCCGTCGAGGATCTGAGCAAGACCCTGAATGAGCTTAAGCAC
TTGAAGGGTGACACCTTTAGCTGGCAGATGAGTAATGCGGAGACGTGGGG
TCAGCTCGGCTTTGACCGACGAGGACACGTGTCTTGACGGGTTTGAGGAT
GTTGATAGCAAGGTCAAGAGTGATGTGAAGCGCAAGATCGGCAACGTGGC
TAGGGTTACTAGTAATGCTTTGTACATGCTTACTCGTCTTGATGAGAGTC
GTGAAAGGCCCAGATTGATGCCTTGATGAAG
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