BQ623627

Overview
NameBQ623627
Unique NameBQ623627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.733e-52
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AIIKARK           CDHIRDWVLGTP+GT+VSMGVYSDGSYNVP+GLIYSFPVTC NGEW IVQGLSIDEFSRKKLDLTAEEL+EEK
Sbjct:  234 AIIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIVQGLSIDEFSRKKLDLTAEELTEEK 324          

HSP 2 Score: 73.1738 bits (178), Expect = 3.733e-52
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            NHATVNT AGEKPVR+LV DDAWLNGEFI+TVQQRGA   +++K
Sbjct:  197 NHATVNTPAGEKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARK 240          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.526e-50
Identity = 73/91 (80.22%), Postives = 77/91 (84.62%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AIIKARK           CDHIRDWV+GTPEGT+VSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGL ID+ SRKK+DLTAEEL EEK
Sbjct:  234 AIIKARKLSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLPIDDASRKKMDLTAEELKEEK 324          

HSP 2 Score: 69.3218 bits (168), Expect = 1.526e-50
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            NHATV T+ GEKPVRELVK+D WLNGEFI+TVQQRGA   +++K
Sbjct:  197 NHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARK 240          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.272e-49
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AIIKARK           CDHIRDWVLGTPEGT+VSMGVYSDGSY+VP+GLIYSFPVTCRNG+W+IVQGL IDE SRKK+DLTAEEL EEK
Sbjct:  234 AIIKARKLSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIVQGLPIDEVSRKKMDLTAEELKEEK 324          

HSP 2 Score: 69.3218 bits (168), Expect = 1.272e-49
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            NHA V T++GEKPVRELVKDDAWL+GEFI+TVQQRGA   +++K
Sbjct:  197 NHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARK 240          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.059e-48
Identity = 69/91 (75.82%), Postives = 74/91 (81.32%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AIIKARK           CDHIRDWVLGTPEGT+VSMGVYSDGSY VP+GLIYSFPVTC  GEW IVQGL IDEFSRKK+D TA+EL+EEK
Sbjct:  234 AIIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPIDEFSRKKMDATAQELTEEK 324          

HSP 2 Score: 70.8626 bits (172), Expect = 1.059e-48
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            NHATV T+ GEKPVRELV DD WLNGEFITTVQQRGA   +++K
Sbjct:  197 NHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARK 240          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.381e-48
Identity = 70/91 (76.92%), Postives = 74/91 (81.32%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AIIKARK           CDHI DWVLGTPEGTWVSMGVYSDGSYNVPAG+IYSFPVTC+NGEWTIVQGL ID+ SRKK+D TA EL EEK
Sbjct:  234 AIIKARKLSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIVQGLPIDDDSRKKMDATAAELVEEK 324          

HSP 2 Score: 67.0106 bits (162), Expect = 1.381e-48
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            NHATV T   +KPVRELV DDAWLNGEFITTVQQRGA   +++K
Sbjct:  197 NHATVKTQGVDKPVRELVADDAWLNGEFITTVQQRGAAIIKARK 240          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.800e-48
Identity = 72/91 (79.12%), Postives = 75/91 (82.42%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AIIKARK           CDHIRDWVLGTPEGT+VSMGVYSDGSY VPAGLIYSFPVTC  GEWTIVQGL IDEFSRKK+D TA+ELSEEK
Sbjct:  234 AIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIVQGLPIDEFSRKKMDATAQELSEEK 324          

HSP 2 Score: 65.4698 bits (158), Expect = 1.800e-48
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            NHATV T +GEKPVRELV DD WLN EFI+TVQQRGA   +++K
Sbjct:  197 NHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAIIKARK 240          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.324e-47
Identity = 69/92 (75.00%), Postives = 74/92 (80.43%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AIIKARK           CDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAG+IYSFPVTC++GEW IVQGL IDE SR+K+D T  EL EEKA
Sbjct:  234 AIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKDGEWKIVQGLPIDEVSRQKMDATGAELVEEKA 325          

HSP 2 Score: 63.929 bits (154), Expect = 4.324e-47
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            N  TV T +GEK VRELV DDAWLNGEFITTVQQRGA   +++K
Sbjct:  197 NPCTVKTGSGEKAVRELVADDAWLNGEFITTVQQRGAAIIKARK 240          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 106.686 bits (265), Expect = 2.203e-32
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKARK           CDH+RD   GTPEG +VSMG+ SDG SY VP  L+YSFPVT ++  W IV+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  233 AVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEK 324          

HSP 2 Score: 53.5286 bits (127), Expect = 2.203e-32
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            NHA V   A E  V E VKDD+WL GEFITTVQQRGA   +++K
Sbjct:  196 NHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARK 239          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.373e-31
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKARK           CDH+RD   GTPEG +VSMG+ SDG SY +P  L+YSFPVT ++  W +V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  233 AVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEGLPINDFSREKMDLTAKELAEEK 324          

HSP 2 Score: 50.8322 bits (120), Expect = 2.373e-31
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            NHA V     E  V E +KDD+WL GEFITTVQQRGA   +++K
Sbjct:  196 NHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARK 239          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 105.531 bits (262), Expect = 4.025e-31
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKARK           CDH+RD   GTPEG +VSMGV SDG SY VP  L+YSFPV  +N  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  233 AVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          

HSP 2 Score: 50.447 bits (119), Expect = 4.025e-31
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            NHA V     E  V E +KDD+WL GEF+TTVQQRGA   +++K
Sbjct:  196 NHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARK 239          
The following BLAST results are available for this feature:
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
MDHC_MEDSA3.733e-5281.32Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC2_ARATH1.526e-5080.22Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC1_ARATH1.272e-4978.02Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC_MAIZE1.059e-4875.82Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDHC_MESCR1.381e-4876.92Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC_ORYSJ1.800e-4879.12Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC_BETVU4.324e-4775.00Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDHC_PIG2.203e-3257.61Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_BOVIN2.373e-3155.43Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]
MDHC_HUMAN4.025e-3157.61Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00718 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00718 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623627 ID=BQ623627; Name=BQ623627; organism=Citrus sinensis; type=EST; length=715bp
CAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGC
TTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAA
CAACGTGGTGCTGGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGT
CTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACT
CCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAA
TGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGCAACGGTG
AATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAGGAAGAAG
TTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTC
ATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCC
TTAGCTTTGTCTGAGTAGTTGGTATAGTTACAGTTTCGAATAAAACCATT
GTTGACACCTGGAGGAACCATTGATGATGGAAAAGCCTTTCCATCTTATG
TTGCTATTTCTGCATTTGAATATCGGGATTTGGGAGTTTTGGTACTTTTC
CTGGATAAATGGATATAAAGGCCCATTGGGATTTATGTATCAAACTATCA
ATAACAATTTTTTTTTTTGTTTTAACAAAAAAAGAAAAAAAATAAAAAAT
TTAAATAAACCTCAG
back to top