BQ623630

Overview
NameBQ623630
Unique NameBQ623630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2066 contig Csv1_Contig2066:123..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.571e-54
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 2
Query:   95 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI KVLL
Sbjct:    3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 104          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.358e-54
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 2
Query:   95 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPYAGGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI KVLL
Sbjct:    3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 104          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.358e-54
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 2
Query:   95 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTI KVLL
Sbjct:    3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLL 104          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.358e-54
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 2
Query:   95 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP +SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI KVLL
Sbjct:    3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 104          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 7.480e-54
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 2
Query:   95 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP +SPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI KVLL
Sbjct:    3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 104          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 8.270e-53
Identity = 94/102 (92.16%), Postives = 101/102 (99.02%), Query Frame = 2
Query:   95 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            SKRILKELKDLQKDPP++CSAGPVAEDMFHWQATIMGPP+SPYAGGVFLV+IHFPPDYPFKPPKV+F+TKV+HPNINSNGSICLDILKEQWSPALTI KVLL
Sbjct:    3 SKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLL 104          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.907e-49
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 2
Query:   95 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            SKRI KEL+DLQ+DPP SCSAGP  +DMF WQATIMGP DSP+AGGVFLVTIHFPPDYPFKPPKVAFRTKV+HPNINSNGSICLDILKEQWSPALT+ KVLL
Sbjct:    3 SKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLL 104          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.547e-49
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 2
Query:   95 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            ++RILKELK+LQ+DPP SCSAGP  EDMFHWQATIMGP +SPY+GGVFLV IHFPPDYPFKPPKV FRTKVFHPNINSNG+ICLDILK+QWSPALTI KVLL
Sbjct:    3 TRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLL 104          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.792e-46
Identity = 81/101 (80.20%), Postives = 90/101 (89.11%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGPPDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTI KVLL
Sbjct:    4 KRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 104          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.792e-46
Identity = 78/102 (76.47%), Postives = 94/102 (92.16%), Query Frame = 2
Query:   95 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            SKRI KEL DL++DPPTSCSAGPV +D++HWQA+IMGP DSPYAGGVF ++IHFP DYPFKPPK++F TK++HPNIN+NG+ICLDILK+QWSPALT+ KVLL
Sbjct:    4 SKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLL 105          
The following BLAST results are available for this feature:
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
UBC9_ARATH2.571e-5497.06SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC4_SOLLC3.358e-5497.06Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC28_ARATH3.358e-5496.08Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH3.358e-5497.06Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC8_ARATH7.480e-5496.08Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC11_ARATH8.270e-5392.16Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH1.907e-4987.25Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH5.547e-4985.29Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBCD1_DROME9.792e-4680.20Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC4_YEAST9.792e-4676.47Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00721 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00721 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623630 ID=BQ623630; Name=BQ623630; organism=Citrus sinensis; type=EST; length=429bp
TGCCCTCCGATCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTT
GTTGTGGCTTTAACTTTTAATAATCCGTTGAAGCATCATGGCCTTCGAAG
CGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTG
CAGCGCTGGTCCGGTGGCTGAAGACATGTTCCATTGGCAAGCAACAATTA
TGGGCCCCCCTGATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATT
CATTTTCCTCCAGATTATCCCTTCAAGCCCCCAAAGGTTGCTTTTAGGAC
CAAGGTCTTCCACCCAAACATCAACAGCAATGGAAGCATATGTCTTGATA
TCCTTAAAGAACAGTGGAGCCCAGCTCTTACCATTTGAAAGGTCCTGCTT
TTCTATCTGCTCATTGCTTACTGACCCAA
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