BQ623633 | Citrus Genome Database

Overview


Name	BQ623633
Unique Name	BQ623633
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	488

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig32	contig	Csv1_Contig32:1..487.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623633 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.850e-40
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 3

Query:    3 KTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXXTKLEITKLVSGILYF 377
            +TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                 TC+E TI+LCYF LC+EDYHW WRS+LT+G               +KL+IT   S ILYF
Sbjct:  503 RTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYF 627

HSP 2 Score: 56.225 bits (134), Expect = 1.850e-40
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1

Query:  376 FGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVK 480
            FGY +I+   FF+ TGTIGF+ACFWFV KIYS VK
Sbjct:  627 FGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVK 661

[Close]

BLAST of BQ623633 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.850e-40
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 3

Query:    3 KTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXXTKLEITKLVSGILYF 377
            +TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                 TC+E TI+LCYF LC+EDYHW WRS+LT+G               +KL+IT   S ILYF
Sbjct:  503 RTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYF 627

HSP 2 Score: 56.225 bits (134), Expect = 1.850e-40
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1

Query:  376 FGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVK 480
            FGY +I+   FF+ TGTIGF+ACFWFV KIYS VK
Sbjct:  627 FGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVK 661

[Close]

BLAST of BQ623633 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.850e-40
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 3

Query:    3 KTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXXTKLEITKLVSGILYF 377
            +TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                 TC+E TI+LCYF LC+EDYHW WRS+LT+G               +KL+IT   S ILYF
Sbjct:  503 RTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYF 627

HSP 2 Score: 56.225 bits (134), Expect = 1.850e-40
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1

Query:  376 FGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVK 480
            FGY +I+   FF+ TGTIGF+ACFWFV KIYS VK
Sbjct:  627 FGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVK 661

[Close]

BLAST of BQ623633 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.850e-40
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 3

Query:    3 KTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXXTKLEITKLVSGILYF 377
            +TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                 TC+E TI+LCYF LC+EDYHW WRS+LT+G               +KL+IT   S ILYF
Sbjct:  502 RTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYF 626

HSP 2 Score: 56.225 bits (134), Expect = 1.850e-40
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1

Query:  376 FGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVK 480
            FGY +I+   FF+ TGTIGF+ACFWFV KIYS VK
Sbjct:  626 FGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVK 660

[Close]

BLAST of BQ623633 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.340e-37
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 3

Query:    3 KTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXXTKLEITKLVSGILYF 377
            +TN+IPRQIPEQ WYM     IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY WWWR++L +G                KL+I + +  +LYF
Sbjct:  483 RTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYF 607

HSP 2 Score: 50.0618 bits (118), Expect = 2.340e-37
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1

Query:  376 FGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVK 480
            FGY  ++  +F++LTGTIGFYA + FVRKIY++VK
Sbjct:  607 FGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVK 641

[Close]

BLAST of BQ623633 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.340e-37
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 3

Query:    3 KTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXXTKLEITKLVSGILYF 377
            +TN+IPRQIPEQ WYM     IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY WWWR++L +G                KL+I + +  +LYF
Sbjct:  483 RTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYF 607

HSP 2 Score: 50.0618 bits (118), Expect = 2.340e-37
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1

Query:  376 FGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVK 480
            FGY  ++  +F++LTGTIGFYA + FVRKIY++VK
Sbjct:  607 FGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVK 641

[Close]

BLAST of BQ623633 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.802e-32
Identity = 70/140 (50.00%), Postives = 84/140 (60.00%), Query Frame = 3

Query:    3 KTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXXTKLEITKLVSGILYFWVHGNCFVCFLCLDG 422
            +TN+IPRQ+P+Q WYM P  SIL+GGILPFGAVFIEL FILTS+W NQ                 T AEI+IV+CYFQLC+ED+HWWWRS+LTAG                 L ITK +S +L F       + F  L G
Sbjct:  482 RTNQIPRQVPDQIWYMNPYLSILMGGILPFGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAG-SSSLYMFIYSVSFFRYLGITKFISSLLDFSYSFIMSLAFAALTG 620

[Close]

BLAST of BQ623633 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.127e-29
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 3

Query:    3 KTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXXTKLEITKLVSGILYFWVHGNCFVCFLCLDG 422
            +TN+IPRQIPEQ WYM     IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY WWWR++L +G                KL+I + +  +LYF       + F  L G
Sbjct:  482 RTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTG 621

[Close]

BLAST of BQ623633 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 4.127e-29
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 3

Query:    3 KTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXXTKLEITKLVSGILYFWVHGNCFVCFLCLDG 422
            +TN+IPRQIPEQ WYM     IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY WWWR++L +G                KL+I + +  +LYF       + F  L G
Sbjct:  482 RTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTG 621

[Close]

BLAST of BQ623633 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 4.127e-29
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 3

Query:    3 KTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXXTKLEITKLVSGILYFWVHGNCFVCFLCLDG 422
            +TN+IPRQIPEQ WYM     IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY WWWR++L +G                KL+I + +  +LYF       + F  L G
Sbjct:  482 RTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTG 621

The following BLAST results are available for this feature:

BLAST of BQ623633 vs. ExPASy Swiss-Prot

BLAST of BQ623633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22


Match Name	E-value	Identity	Description
TM9S2_RAT	1.850e-40	49.60	Transmembrane 9 superfamily member 2 OS=Rattus nor...	[more]
TM9S2_PONAB	1.850e-40	49.60	Transmembrane 9 superfamily member 2 OS=Pongo abel...	[more]
TM9S2_HUMAN	1.850e-40	49.60	Transmembrane 9 superfamily member 2 OS=Homo sapie...	[more]
TM9S2_MOUSE	1.850e-40	49.60	Transmembrane 9 superfamily member 2 OS=Mus muscul...	[more]
TM9S4_RAT	2.340e-37	45.60	Transmembrane 9 superfamily member 4 OS=Rattus nor...	[more]
TM9S4_MOUSE	2.340e-37	45.60	Transmembrane 9 superfamily member 4 OS=Mus muscul...	[more]
PHG1A_DICDI	6.802e-32	50.00	Putative phagocytic receptor 1a OS=Dictyostelium d...	[more]
TM9S4_PONAB	4.127e-29	42.86	Transmembrane 9 superfamily member 4 OS=Pongo abel...	[more]
TM9S4_HUMAN	4.127e-29	42.86	Transmembrane 9 superfamily member 4 OS=Homo sapie...	[more]
TM9S4_BOVIN	4.127e-29	42.86	Transmembrane 9 superfamily member 4 OS=Bos taurus...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00724 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00724 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623633 ID=BQ623633; Name=BQ623633; organism=Citrus sinensis; type=EST; length=488bp
TTAAGACAAACAAAATTCCTAGGCAGATACCAGAGCAGGCATGGTACATG
ACACCAGTATTCTCCATACTCATTGGAGGCATTCTTCCATTTGGGGCTGT
CTTCATCGAGCTCTTCTTCATCTTGACATCTATATGGCTGAACCAGTTCT
ATTACATCTTTGGCTTCCTTTTTATCGTGTTTGTTATACTACTAATCACT
TGCGCAGAGATAACAATAGTGCTCTGCTACTTTCAGTTGTGTAGTGAGGA
CTACCATTGGTGGTGGAGATCTTACCTGACTGCTGGCTCCTCTGCTCTGT
ACCTTTTTCTCTACTCAATTTTCTACTTCTTCACCAAGTTGGAAATTACA
AAGCTGGTTTCGGGCATCCTTTACTTTTGGGTACATGGTAATTGTTTCGT
ATGCTTTCTTTGTCTTGACGGGGACAATTGGCTTTTACGCATGCTTCTGG
TTTGTACGCAAGATCTATTCCTCCGTGAAAAATTGACT