BQ623634

Overview
NameBQ623634
Unique NameBQ623634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2568 contig Csv1_Contig2568:294..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623634 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.339e-44
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 2
Query:   83 AAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 286
            AAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:   30 AAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          

HSP 2 Score: 58.151 bits (139), Expect = 5.339e-44
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1
Query:    1 RSLFKAKLLLAPVADGISLSISRRGYASSSTLG 99
            RSLFKAKLLLAPVADGISLSISRRGYA+++ LG
Sbjct:    3 RSLFKAKLLLAPVADGISLSISRRGYAAAAPLG 35          
BLAST of BQ623634 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.767e-18
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 2
Query:   86 AAPLGTISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 283
            AA   +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:   34 AAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          

HSP 2 Score: 31.187 bits (69), Expect = 5.767e-18
Identity = 15/29 (51.72%), Postives = 21/29 (72.41%), Query Frame = 1
Query:    1 RSLFKAKLLLAPVADGISLSISRRGYASS 87
            RS+   KLL A + DG+ +SISRRGY+ +
Sbjct:    3 RSVSSFKLLGASIFDGLYVSISRRGYSGA 31          
BLAST of BQ623634 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.858e-16
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 2
Query:   86 AAPLGTISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 283
            AA   +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:   34 AAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          

HSP 2 Score: 27.7202 bits (60), Expect = 3.858e-16
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 1
Query:    1 RSLFKAKLLLAPVADGISLSISRRGYASS 87
            RS+   K L A V D + +SISRRGY+ +
Sbjct:    3 RSVSSFKFLGASVFDALYVSISRRGYSGA 31          
The following BLAST results are available for this feature:
BLAST of BQ623634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI5.339e-44100.00Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI5.767e-1857.75Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI3.858e-1654.93Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00725 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00725 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623634 ID=BQ623634; Name=BQ623634; organism=Citrus sinensis; type=EST; length=455bp
CGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGATGGCAT
CTCGCTCTCCATTAGCAGGAGAGGATATGCTAGCAGCAGCACCCTTGGGG
ACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGGCCTGCGGT
GAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCATCACTG
GGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCAGAGCTT
CGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGTGGTGGC
GCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTTAAGTGA
TGTTGTTACAGTAGCAATTTTGACTCACTCTTAAGTCTTTGCTGTTGTAT
TGATATCAACTGTTATTGACAACTTTTAATAGTGAAAAAAAAAAAAAAAA
AAAAA
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