BQ623638

Overview
NameBQ623638
Unique NameBQ623638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5089 contig Csv1_Contig5089:232..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623638 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.560e-39
Identity = 78/109 (71.56%), Postives = 86/109 (78.90%), Query Frame = 2
Query:   20 KALEAASLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGD 346
            K L  +SL G KL +KP+RQSF+PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA+++GD
Sbjct:   17 KGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSASSTGD 125          
BLAST of BQ623638 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.553e-38
Identity = 77/109 (70.64%), Postives = 85/109 (77.98%), Query Frame = 2
Query:   20 KALEAASLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGD 346
            K L  +SLAG KL +KP+RQSF+ KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA ++GD
Sbjct:   17 KGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANSTGD 125          
BLAST of BQ623638 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.237e-37
Identity = 75/109 (68.81%), Postives = 85/109 (77.98%), Query Frame = 2
Query:   20 KALEAASLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGD 346
            K L  +SLAG KL++KP+R SF+PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SAT++G+
Sbjct:   17 KGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATSTGE 125          
BLAST of BQ623638 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 8.711e-36
Identity = 72/109 (66.06%), Postives = 82/109 (75.23%), Query Frame = 2
Query:   20 KALEAASLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGD 346
            K L  +S+AGTKL +KP RQSF+  + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR            S L Y SA A  D
Sbjct:   16 KGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQD 124          

HSP 2 Score: 23.0978 bits (48), Expect = 8.711e-36
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:    1 VQPATIKGLGGS 36
            VQP T+KGL GS
Sbjct:   10 VQPTTLKGLAGS 21          
BLAST of BQ623638 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.260e-31
Identity = 71/110 (64.55%), Postives = 81/110 (73.64%), Query Frame = 2
Query:   20 KALEAASLAGTKLTV-KPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGD 346
            K L  +S++G KL V +P+ +S R    +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S LAY SA+AS D
Sbjct:   15 KGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSASASPD 122          
BLAST of BQ623638 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.499e-30
Identity = 69/114 (60.53%), Postives = 81/114 (71.05%), Query Frame = 2
Query:   20 KALEAASLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGD 346
            K L  +S++G KL V+P+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY SA+AS D
Sbjct:   13 KGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPD 122          
BLAST of BQ623638 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.499e-30
Identity = 69/114 (60.53%), Postives = 81/114 (71.05%), Query Frame = 2
Query:   20 KALEAASLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGD 346
            K L  +S++G KL V+P+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY SA+AS D
Sbjct:   13 KGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPD 122          
BLAST of BQ623638 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.369e-29
Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 2
Query:   20 KALEAASLAGTKLTVKPTRQSFRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGD 346
            K L  +S++G KL V+P+  +    + +A   AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKR            S +AY SA+AS D
Sbjct:   13 KGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASASPD 123          

HSP 2 Score: 23.0978 bits (48), Expect = 1.369e-29
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:    1 VQPATIKGLGGS 36
            VQPA +KGL GS
Sbjct:    7 VQPAAVKGLSGS 18          
BLAST of BQ623638 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.278e-14
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  122 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 229
            KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct:    1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36          
The following BLAST results are available for this feature:
BLAST of BQ623638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSAH_BRARA6.560e-3971.56Photosystem I reaction center subunit VI, chloropl... [more]
PSAH2_ARATH5.553e-3870.64Photosystem I reaction center subunit VI-2, chloro... [more]
PSAH1_ARATH1.237e-3768.81Photosystem I reaction center subunit VI-1, chloro... [more]
PSAH_SPIOL8.711e-3666.06Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_MAIZE2.260e-3164.55Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSJ2.499e-3060.53Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSI2.499e-3060.53Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_HORVU1.369e-2958.56Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_PEA3.278e-1491.67Photosystem I reaction center subunit VI (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00729 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00729 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623638 ID=BQ623638; Name=BQ623638; organism=Citrus sinensis; type=EST; length=408bp
GTGCAACCAGCCACCATCAAAGGCCTTGGAGGCAGCTTCTCTTGCTGGAA
CTAAGCTCACCGTCAAGCCAACTCGCCAGAGTTTCAGACCCAAAAGCTTC
AAGGCTGGTGCTGTTGTGGCTAAGTATGGTGATAAGAGTGTGTACTTTGA
TTTGGAGGATTTGGGCAACACTACGGGCCAGTGGGACTTGTACGGATCAG
ATGCTCCTTCACCGTACAACTCTCTTCAGAGCAAGTTCTTTGAGACATTT
GCGGCTCCATTCACCAAGAGAGGATTATTGCTCAAGTTCTTGATATTGGG
AGGAGGTTCAACCCTTGCTTACTTCAGTGCTACAGCTAGTGGTGACATTC
TCCCAATAAAAAAGGGCCCTAAACTTACACCAAAACTCGGACCACGTGGT
GAGATCTA
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