BQ623640

Overview
NameBQ623640
Unique NameBQ623640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12237 contig Csv1_Contig12237:511..1053. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK3_ARATH (Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.478e-63
Identity = 120/168 (71.43%), Postives = 140/168 (83.33%), Query Frame = 3
Query:    6 MSSQIVXXXXXXXXXXXXXXKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRA-GSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            MSSQI               KN+RF+SEGRA+ AAAAV+ SGK+P   S+F R+ GS  AS+SW++G +A+PAAAY +Q+QEV AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLV IK++VPSK+FAQKHYHDLKERPFFNGLC+FLSSGPVIAMVWEG+GV+
Sbjct:    1 MSSQICRSASKAAKSLLSSAKNARFFSEGRAIGAAAAVSASGKIPLYASNFARSSGSGVASKSWITGLLALPAAAYMIQDQEVLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVI 168          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK4_ARATH (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 1.171e-60
Identity = 113/167 (67.66%), Postives = 134/167 (80.24%), Query Frame = 3
Query:    6 MSSQIVXXXXXXXXXXXXXXKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            MSSQI               KN+RF+SEGRA+ AA+ V  +GK+P   S+FG++GS   S SW++G +A+PAAA+ LQ+QE  AAEMERTFIAIKPDGVQRGLISEII+RFERKG+KLV IK++VPSK FAQKHYHDLKERPFFNGLC FLSSGPV+AMVWEGEGV+
Sbjct:    1 MSSQICRSASRAARSLLSSAKNARFFSEGRAIGAASVVHATGKVPQYASNFGKSGSGFVSNSWITGLLALPAAAFMLQDQEALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVI 167          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK4_SPIOL (Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 6.650e-56
Identity = 107/148 (72.30%), Postives = 124/148 (83.78%), Query Frame = 3
Query:   69 NSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVLPW 512
            +SRF  EGR V+A AAV+   K PYL S     G + AS +W+S A+AIPAAAY LQ+QE  AAE ERTFIAIKPDGVQRGLISEI++RFERKGFKLVAIK+V+PSK+FAQKHYHDL ERPFFNGLC+FLSSGPV+AMVWEGEGV+ +
Sbjct:   24 SSRFLPEGRTVAATAAVSLRVKAPYLASF----GGANASGTWMSTALAIPAAAYLLQDQEACAAEFERTFIAIKPDGVQRGLISEIVARFERKGFKLVAIKVVIPSKDFAQKHYHDLSERPFFNGLCDFLSSGPVVAMVWEGEGVIKY 167          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK3_SPIOL (Nucleoside diphosphate kinase 3 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.301e-32
Identity = 64/85 (75.29%), Postives = 76/85 (89.41%), Query Frame = 3
Query:  258 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVLPW 512
            AE ERTFIAIKPDGVQRGLISEI++RFERKGF LVAIK+V+PS+ FAQKHY DLK++PF+ GL  + SSGPV+AMVWEGEGV+ +
Sbjct:    1 AEFERTFIAIKPDGVQRGLISEIVARFERKGFSLVAIKVVIPSRPFAQKHYADLKDKPFYVGLVAYWSSGPVVAMVWEGEGVIKY 85          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.050e-29
Identity = 58/81 (71.60%), Postives = 71/81 (87.65%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERTF+AIKPDGVQRGLI+EI+ RFE KGFKLV +K + PSKE A+KHY   K+RPFF+GL +F++SGPVIAMVWEGEGV+
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.182e-28
Identity = 57/81 (70.37%), Postives = 70/81 (86.42%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K ++PSKE A+KHY   KERPFF GL  F++SGPV+AMVWEG+GV+
Sbjct:    3 VERTFLAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLVGFITSGPVVAMVWEGDGVI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.182e-28
Identity = 57/81 (70.37%), Postives = 71/81 (87.65%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERTF+AIKPDGVQRGLI+EI+ RFE KGFKLV +K + PSKE A+KHY   K+RPFF+GL +F++SGPV+AMVWEGEGV+
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVVAMVWEGEGVI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_PROM4 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=ndk PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.633e-28
Identity = 55/80 (68.75%), Postives = 71/80 (88.75%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTF+AIKPDGVQRGL+ EI+SRFERKGFKL+A+K ++PS+  A++HY   +ERPFF GL +F++SGPVIAM+WEGEGV+
Sbjct:    4 ERTFLAIKPDGVQRGLVGEILSRFERKGFKLIALKQLIPSRALAEQHYGVHRERPFFKGLVDFITSGPVIAMIWEGEGVI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_PROM0 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=ndk PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.633e-28
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTFIAIKPDGVQRG +SEII RFE+KGFKLV +K ++PSKE AQ HY   +ERPFF  L +F+SSGPV+AMVWEGEGV+
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_PROMS (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain AS9601) GN=ndk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.491e-28
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTFIAIKPDGVQRG +SEI+ RFE+KGFKLV +K ++PSKE AQ HY   +ERPFF  L +F+SSGPV+AMVWEGEGV+
Sbjct:    4 ERTFIAIKPDGVQRGYVSEILGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVI 83          
The following BLAST results are available for this feature:
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK3_ARATH1.478e-6371.43Nucleoside diphosphate kinase III, chloroplastic/m... [more]
NDK4_ARATH1.171e-6067.66Nucleoside diphosphate kinase IV, chloroplastic/mi... [more]
NDK4_SPIOL6.650e-5672.30Nucleoside diphosphate kinase 4, chloroplastic OS=... [more]
NDK3_SPIOL2.301e-3275.29Nucleoside diphosphate kinase 3 OS=Spinacia olerac... [more]
NDK_PROMT9.050e-2971.60Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMA1.182e-2870.37Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM11.182e-2870.37Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM42.633e-2868.75Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM02.633e-2872.50Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMS4.491e-2871.25Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00731 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00731 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623640 ID=BQ623640; Name=BQ623640; organism=Citrus sinensis; type=EST; length=543bp
CAAGTATGAGCTCTCAGATAGTTAGATCTGCTTCTAGAACCGCAAGGTCT
CTGCTTTCAGCTTCCAAGAATTCGCGCTTTTACTCCGAAGGGCGAGCTGT
ATCTGCTGCAGCGGCAGTTACATTCAGTGGGAAGTTGCCTTATCTTGTTT
CAAGTTTTGGGAGGGCTGGTTCCTCAACTGCATCTCGATCATGGCTCTCG
GGAGCCATTGCAATTCCTGCTGCAGCTTACACGCTCCAGGAGCAGGAAGT
ACATGCTGCAGAGATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGG
TGCAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGC
TTTAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACA
AAAACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCG
AGTTCCTTAGCTCTGGTCCAGTCATTGCCATGGTATGGGAAGGAGAGGGA
GTATTACCTTGGGTCCAAACTCCTGGAACCCCAGACCTCCGAA
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