BQ623650

Overview
NameBQ623650
Unique NameBQ623650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1707 contig Csv1_Contig1707:548..972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623650 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 2 
Query:    5 KLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 178
            KLN Y   H M D A+P AA +S +YN LV +MT  GY++ GYLPLVP+DDI KA+++
Sbjct:  151 KLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208
The following BLAST results are available for this feature:
BLAST of BQ623650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1736_ARATH2.798e-1355.17REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00741 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00741 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623650 ID=BQ623650; Name=BQ623650; organism=Citrus sinensis; type=EST; length=425bp
GTATAAACTAAACCACTATGCATTGTTCCACACAATGGCAGATATGGCTG
TTCCCACAGCTGCACAGTGGTCCAAGAAGTATAACCATCTTGTCGTGGAG
ATGACGAAGAAGGGTTACACAGTCTTTGGCTATCTTCCTTTGGTTCCCAT
TGATGACATAGCCAAAGCTTTTAAGCAGAGTGAAGCTCCCAAGAAAGAAG
ATGCTCCAGAGAAAGAAGATGCTCCAAAGAAAGAAGATGCAAAGGAAAAG
GATTCAAGCTCAGATTCTGACTAAGAATTTACTTTTTGTCTGATGAGTTT
GCTTCATCTAGTGGTCTGGTTTGCAAAATTCTAGGCTTGAAGGTGTGGCC
GGGTAGTGGCAGTATGGTTTGTAATCTGTAAATGACCTTTAAGACTTGGT
TTTCCCCATATGTGAATGGAGATAA
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