BQ623660

Overview
NameBQ623660
Unique NameBQ623660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5271 contig Csv1_Contig5271:266..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623660 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.393e-41
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1
Query:  178 PVADGISLSIGRRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 429
            PVADGISLSI RRGYAAAAPLGTISRTGIMEKNDL PAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:   14 PVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of BQ623660 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.022e-18
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 1
Query:  181 VADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 426
            + DG+ +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:   15 IFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of BQ623660 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.444e-17
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  181 VADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 426
            V D + +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:   15 VFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of BQ623660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI7.393e-4197.62Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI3.022e-1853.33Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI7.444e-1751.11Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00751 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00751 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623660 ID=BQ623660; Name=BQ623660; organism=Citrus sinensis; type=EST; length=591bp
GGCAAAGAGAGCGAGCCGCTAGCTTTTGCCTATAGCTACTGCAGGAGCAG
AATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAACATCCCAGCTAGCTA
TCTTCATATCTATTAAGTTCTATAAGTAAATAAAACAATGGCCCGCTTTT
CTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGATGGCATCTCGCT
CTCCATTGGCAGGAGAGGATATGCTGCAGCAGCACCCTTGGGAACCATAT
CTCGGACTGGTATCATGGAGAAAAATGATTTGACGCCTGCGGTGAGAGAG
GATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCATCACTGGGTACTA
CAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCAGAGCTTCGAGAGA
TGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGTGGTCGCGCATAGC
AGCAGATCCTTTGCTGTTAGCGGGGCTTTAACTTTTAAGTGATGTTGTTA
CAGTAGCAATTTTGACTCACTCTAAAGTCTTTGCTGTTGGTTTGATATCA
ACTGTATTACAACTTTAATAGTGCATTTCCATGATTTTGTC
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