BQ623668

Overview
NameBQ623668
Unique NameBQ623668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:166..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 1.427e-56
Identity = 109/134 (81.34%), Postives = 115/134 (85.82%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPKS 403
            RKNGYIVIK RPCKV+EVSTSKTGKHGHAKCHFVGIDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLTE GNTKDDLRLPTDE LL+Q+KDGFAEG+ L        G   R   LKDIGPK+
Sbjct:   28 RKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMG-EERICSLKDIGPKN 160          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.427e-56
Identity = 109/133 (81.95%), Postives = 115/133 (86.47%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPK 400
            RKNG+IVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LLTQ+KDGFAEG+ L        G   +   LKDIGPK
Sbjct:   28 RKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMG-EEQICALKDIGPK 159          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 9.250e-56
Identity = 107/134 (79.85%), Postives = 118/134 (88.06%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSV-PLKDIGPK 400
            RK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD++LL+Q+KDGFAEG+ L     V + +    +  LKDIGPK
Sbjct:   28 RKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVS--VMSAMGEEQINALKDIGPK 159          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 9.250e-56
Identity = 108/134 (80.60%), Postives = 116/134 (86.57%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSV-PLKDIGPK 400
            RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTDE LL+ +KDGFAEG+ L     V + +    +  LKDIGPK
Sbjct:   28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVS--VMSAMGEEQINALKDIGPK 159          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 5.996e-55
Identity = 106/133 (79.70%), Postives = 114/133 (85.71%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPK 400
            RK+G+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+KDGFAEG+ L        G   +   +KDIGPK
Sbjct:   28 RKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMG-EEQICGIKDIGPK 159          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 5.996e-55
Identity = 105/133 (78.95%), Postives = 115/133 (86.47%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPK 400
            RKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLT+NG+TKDDL+LPTD++LLTQ+KDGFA+G+ L        G   +   LKDIGPK
Sbjct:   28 RKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMG-EEQICALKDIGPK 159          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 7.831e-55
Identity = 106/133 (79.70%), Postives = 113/133 (84.96%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPK 400
            RK G+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+KDGFAEG+ L        G   +   +KDIGPK
Sbjct:   28 RKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMG-EEQICGIKDIGPK 159          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.745e-54
Identity = 106/135 (78.52%), Postives = 116/135 (85.93%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSV-PLKDIGPKS 403
            RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL Q+KDGF EG+ L     V + +    +  +KDIG K+
Sbjct:   28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDLVVS--VMSAMGEEQINAIKDIGTKN 160          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.886e-54
Identity = 105/135 (77.78%), Postives = 115/135 (85.19%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSV-PLKDIGPKS 403
            RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE LL Q+KDGF EG+ L     V + +    +  +KD+G K+
Sbjct:   28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDLVVS--VMSAMGEEQINAVKDVGTKN 160          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.886e-54
Identity = 104/133 (78.20%), Postives = 112/133 (84.21%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPK 400
            RKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL  +KDGFAEG+ L        G   +   +KD+GPK
Sbjct:   28 RKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMG-EEQICGIKDVGPK 159          
The following BLAST results are available for this feature:
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
IF5A_MANES1.427e-5681.34Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A2_NICPL1.427e-5681.95Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A4_SOLTU9.250e-5679.85Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A3_SOLLC9.250e-5680.60Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A5_SOLTU5.996e-5579.70Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A2_MEDSA5.996e-5578.95Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A1_SOLLC7.831e-5579.70Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A3_SOLTU1.745e-5478.52Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A2_SOLLC3.886e-5477.78Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_TOBAC3.886e-5478.20Eukaryotic translation initiation factor 5A-1 OS=N... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00759 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00759 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623668 ID=BQ623668; Name=BQ623668; organism=Citrus sinensis; type=EST; length=449bp
CCGTAAGAATGGCTACATCGTCATCAAAGGCCGTCCCTGCAAGGTTGTGG
AAGTCTCCACCTCCAAGACTGGAAAGCACGGTCATGCTAAGTGCCACTTT
GTTGGAATTGATATCTTCAGTGGAAAGAAGTTGGAAGATATTGTCCCCTC
TTCTCATAACTCTGATGTTCCCCATGTCAACCGTACCGACTATCAGTTGA
TTGATATTTCTGAGGATGGATTTGTGAGTTTGCTGACTGAAAATGGGAAC
ACCAAGGATGATCTGAGGCTCCCAACCGATGAGACTCTGCTGACCCAGCT
CAAGGACGGTTTTGCTGAGGGGGAAGGACTTGGTTTTGACTGTCATGTCT
TCAATGGGGTGAGGAGCAGATCTGTGCCCCTCAAGGATATTGGCCCCAAG
TCGTAGTTGCGCAATATGTGATTATCTGCTGTGTCTGGGTGCATCTGAT
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