BQ623671

Overview
NameBQ623671
Unique NameBQ623671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:661..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.435e-90
Identity = 171/188 (90.96%), Postives = 177/188 (94.15%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPMAAAA 565
            S+EDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF LPIGKAKIEREGKDVTITAFSK+VG +LKAAEIL KEGISAEVINLRSIRPLDR TINASVRKTNRLVTVEEGFPQHGVGAEIC SVIEESF YLDA VERI GADVPMPYA NLER+ VP VEDIVRAAKRAC+RSVP+AAAA
Sbjct:  172 SAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRPLDRPTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDATVERIGGADVPMPYAGNLERLVVPHVEDIVRAAKRACHRSVPLAAAA 359          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 2.722e-87
Identity = 162/181 (89.50%), Postives = 174/181 (96.13%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRS 544
            S+EDARGLLKAAIRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKIEREGKDVTI  FSK+VG +LKAAE LA+EGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEEGFPQHGV AEICASV+EESFSYLDAPVERIAGADVPMPYAANLER+A+PQ+EDIVRA+KRACYRS
Sbjct:  182 SAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRASKRACYRS 362          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.192e-58
Identity = 115/181 (63.54%), Postives = 144/181 (79.56%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRS 544
            S+ D RGLLK+AIRD +PVV+LE+ELLY   F +S +  D  + +PIGKAK+EREGKDVTI  FS+IV   ++AAEILAKEGISAEVINLR+IRP+D  TI  S++KTN+LVTVEEG+ Q G+GAEI A ++E +F YLDAP+ERI GADVPMPYA+NLE  A+ Q ++IV AAKR   R+
Sbjct:  175 SAADHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVSNCMEAAEILAKEGISAEVINLRTIRPIDAETIVNSLKKTNKLVTVEEGWAQSGIGAEISALMMEHAFDYLDAPIERICGADVPMPYASNLENAAMVQTQNIVNAAKRVTQRN 355          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 5.181e-54
Identity = 114/177 (64.41%), Postives = 134/177 (75.71%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            S+EDARGLLKAAIRDP+PVVFLENELLYGESF +S E L   F LP  KAKIEREG D++I  +++ V  SL+AAEIL K+ G+SAEVINLRSIRPLD   I  +V+KTN L+TVE  FP  GVGAEI A V+E E+F YLDAP++R+ GADVP PYA  LE  A P    IV+A K
Sbjct:  185 SAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEALSPEFTLPY-KAKIEREGTDISIVTYTRNVQFSLEAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKKTNHLITVESTFPSFGVGAEIVAQVMESEAFDYLDAPIQRVTGADVPTPYAKELEDFAFPDTPTIVKAVK 360          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.507e-53
Identity = 108/181 (59.67%), Postives = 140/181 (77.35%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL-AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 538
            S+EDARGLLKAAIRDP+PVV LENE+LYG++FP+S E L   F LP G AK+ER GKD+TI   S  V  +L+AA+ L A  G+ AEVINLRSIRPLD +TI ASV+KTNR+VTV++ + QHG+G+EI A ++E ++F YLDAPVER++ ADVPMPY+  +E  +VP  + +V AAK+  Y
Sbjct:  184 SAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPVERVSMADVPMPYSHPVEAASVPNADVVVAAAKKCLY 364          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.507e-53
Identity = 107/177 (60.45%), Postives = 136/177 (76.84%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 529
            +SEDA+GL+K+AIRD +PVV LENEL+YG +F + AE     F +PIGKAKIER+G  +T+ A S+ VG  L+AA +L+KEGI  EVINLR+IRP+D   I ASV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  +VPQV+DI+ A K+
Sbjct:  179 NSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKVLEDNSVPQVKDIIFAVKK 355          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.969e-53
Identity = 109/177 (61.58%), Postives = 135/177 (76.27%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 529
            SSEDA+GL+K+AIRD +PVV LENEL+YG  F + +E     F +PIGKAKIER+G  VTI A S+ VG  L+AA +L+KEGI  EVINLR+IRP+D  TI  SV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  +VPQV+DI+ A K+
Sbjct:  179 SSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGIECEVINLRTIRPMDIETIEGSVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFAIKK 355          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 5.728e-53
Identity = 105/177 (59.32%), Postives = 135/177 (76.27%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 529
            +SEDA+GL+K+AIRD +PVV LENEL+YG +F +  E     F +PIGKAKIER+G  +T+ A S+ VG  L+AA +L+KEGI  EVINLR+IRP+D   I ASV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A K+
Sbjct:  179 NSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.843e-52
Identity = 103/177 (58.19%), Postives = 134/177 (75.71%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 529
            +SEDA+GL+K+AIRD +PVV LENEL+YG  F    E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+IRP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A K+
Sbjct:  179 NSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.843e-52
Identity = 103/177 (58.19%), Postives = 134/177 (75.71%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 529
            +SEDA+GL+K+AIRD +PVV LENEL+YG  F    E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+IRP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A K+
Sbjct:  179 NSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
The following BLAST results are available for this feature:
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ODPB_PEA3.435e-9090.96Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ARATH2.722e-8789.50Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI1.192e-5863.54Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST5.181e-5464.41Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO1.507e-5359.67Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE1.507e-5360.45Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BOVIN1.969e-5361.58Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT5.728e-5359.32Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PONAB2.843e-5258.19Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN2.843e-5258.19Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00762 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00762 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623671 ID=BQ623671; Name=BQ623671; organism=Citrus sinensis; type=EST; length=741bp
CAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGG
ATCCTGTTGTTTTTCTTGAAAATGAGTTGTTATATGGTGAGTCATTCCCG
GTATCAGCTGAAGTTCTTGATTCCAGTTTTTGCCTTCCAATTGGGAAAGC
TAAAATTGAGAGAGAAGGAAAGGATGTAACCATTACAGCTTTCTCAAAAA
TTGTGGGCCTTTCACTCAAGGCGGCTGAGATACTTGCAAAGGAAGGAATA
AGTGCTGAGGTTATCAATCTGCGGTCAATTAGGCCACTAGATAGATCCAC
AATCAATGCTTCTGTCAGAAAAACTAACAGACTGGTAACAGTTGAAGAAG
GGTTCCCTCAGCATGGAGTTGGTGCCGAAATCTGTGCATCCGTTATTGAG
GAAAGCTTCAGTTATCTTGATGCACCAGTTGAGAGAATTGCTGGAGCTGA
TGTTCCAATGCCATATGCAGCCAATCTTGAGAGAATGGCTGTCCCACAGG
TTGAAGATATTGTCCGAGCTGCCAAGAGAGCATGCTACAGATCTGTGCCA
ATGGCTGCTGCAGCATAAAAGAACTGATTCTGCCCTGAAGCTTTGTCAGA
TCCTGGAACAATAGAGGGATTGTACATTTTTCCCATTCTCAACACTTTTT
TGGGGGAATTGATCATGAAATAATTGGAGATTGGTGATGACAGCAGGAAA
TTTTGTGGCTCAGTTTTCTCTTGTTAATGTGGAAATCAACA
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