BQ623673

Overview
NameBQ623673
Unique NameBQ623673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623673_ssr554 microsatellite BQ623673_ssr554:554..565. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623673 vs. ExPASy Swiss-Prot
Match: FLA12_ARATH (Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 2.758e-44
Identity = 87/152 (57.24%), Postives = 115/152 (75.66%), Query Frame = 3
Query:    6 GPTNATKILEKVGHFSFFIRLLKATTVRDQIERQLNDTNSGVTVFAPTDNAFXXXXXXXXXXXXDPQKELLIQFHVLSSYIPPTRFQTLRNPLRTNAGTNSRYEYPLNVTSSGNSVNISTGITNTSVSSIVYSDGQLAVYQVDKVLLPWSIF 461
            GPTN TKILEK G F+ FIRLLK+T V +Q+  QLN++++G+T+FAP+D++F            D Q+  LIQFHV+ SY+  + FQT+ NPLRT AG ++   +PLNVT+SGN+VNI++G+TNT+VS  VYSDGQLAVYQVDKVLLP  +F
Sbjct:   36 GPTNVTKILEKAGQFTVFIRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLNVTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVF 187          
BLAST of BQ623673 vs. ExPASy Swiss-Prot
Match: FLA11_ARATH (Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 3.371e-42
Identity = 89/155 (57.42%), Postives = 110/155 (70.97%), Query Frame = 3
Query:    3 SGPTNATKILEKVGHFSFFIRLLKATTVRDQIERQLNDTNS-GVTVFAPTDNAFXXXXXXXXXXXXDPQKELLIQFHVLSSYIPPTRFQTLRNPLRTNAGTNSRYEYPLNVTSSGNSVNISTGITNTSVSSIVYSDGQLAVYQVDKVLLPWSIFG 464
            SGPTN T ILEK G F+ FIRLLK+T   DQI  QLN ++S G+TVFAPTDNAF            D QK  L+QFHVL + I   +FQT+ NPLRT AG     ++PLN+TSSGN VNI+TG+ + +V++ VYSD QLAVYQVD+VLLP ++FG
Sbjct:   32 SGPTNITAILEKAGQFTLFIRLLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMFG 186          
BLAST of BQ623673 vs. ExPASy Swiss-Prot
Match: FLA9_ARATH (Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana GN=FLA9 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.090e-24
Identity = 63/154 (40.91%), Postives = 81/154 (52.60%), Query Frame = 3
Query:    3 SGPTNATKILEKVGHFSFFIRLLKATTVRDQIERQLNDTNSGVTVFAPTDNAFXXXXXXXXXXXXDPQKELLIQFHVLSSYIPPTRFQTLRNPLRTNAGTNSRYEYPLNVTSSGNSVNISTGITNTSVSSIVYSDGQLAVYQVDKVLLPWSIFG 464
            +GP N T ILEK G F+ FI LL  T V  Q+  Q+N ++ G+TVFAPTDNAF               +  LI +HV   Y       ++ NP+RT A       Y LN T   N +N+STG   T +S+ +     LAVY VD VLLP  +FG
Sbjct:   35 AGPINLTAILEKGGQFTTFIHLLNITQVGSQVNIQVNSSSEGMTVFAPTDNAFQNLKPGTLNQLSPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQASGRDNGVYGLNFTGQTNQINVSTGYVETRISNSLRQQRPLAVYVVDMVLLPGEMFG 188          
BLAST of BQ623673 vs. ExPASy Swiss-Prot
Match: FLA13_ARATH (Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana GN=FLA13 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.223e-24
Identity = 64/155 (41.29%), Postives = 85/155 (54.84%), Query Frame = 3
Query:    3 SGPTNATKILEKVGHFSFFIRLLKATTVRDQIERQLNDTNSGVTVFAPTDNAFXXXXXXXXXXXXDPQKELLIQFHVLSSYIPPTRFQTLRNPLRTNA-GTNSRYEYPLNVTSSGNSVNISTGITNTSVSSIVYSDGQLAVYQVDKVLLPWSIFG 464
            +GP N T ILEK G F   IRLL  T + +QI  Q+N ++ G+TV APTDNAF               +  LI +HV   +       ++ NP+RT A G +    Y LN T  GN VN+STG+  T +S+ +  +  LAVY VD VLLP  +FG
Sbjct:   32 AGPINITAILEKGGQFVTLIRLLNTTQIGNQINIQINSSSEGMTVLAPTDNAFQNLKPGTLNKLSPDDQVKLILYHVSPKFYTLEDLLSVSNPVRTQASGRDVGGVYGLNFTGQGNQVNVSTGVVETRLSTSLRQERPLAVYVVDMVLLPEEMFG 186          
BLAST of BQ623673 vs. ExPASy Swiss-Prot
Match: FLA6_ARATH (Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana GN=FLA6 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 57/154 (37.01%), Postives = 80/154 (51.95%), Query Frame = 3
Query:    9 PTNATKILEKVGHFSFFIRLLKATTVRDQIERQLNDTNSGVTVFAPTDNAFXXXXXXXXXXXXDPQKELLIQFHVLSSYIPPTRFQTLRNPLRTNAGTNSRYEYPLNVT--SSGNSVNISTGITNTSVSSIVYSDGQLAVYQVDKVLLPWSIFG 464
            P N T ILE    F+  I+LL  T V  Q+  QLN ++ G+T+FAPTDNAF              Q+  L+ +H++  Y   +      NP+RT A       + LN T  +  N VN+STG+  T +++ +     LAVY VD VLLP  +FG
Sbjct:   36 PINLTAILEAGHQFTTLIQLLNTTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDLLLASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSVLLPEELFG 189          
BLAST of BQ623673 vs. ExPASy Swiss-Prot
Match: FLA7_ARATH (Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana GN=FLA7 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 55/152 (36.18%), Postives = 78/152 (51.32%), Query Frame = 3
Query:   15 NATKILEKVGHFSFFIRLLKATTVRDQIERQLNDTNSGVTVFAPTDNAFXXXXXXXXXXXXDPQKELLIQFHVLSSYIPPTRFQTL--RNPLRTNAGTNSRYEYPLNVTSSGNSVNISTGITNTSVSSIVYSDGQLAVYQVDKVLLPWSIFG 464
            N T++L   G F  F+  L +T V +  + Q N+T  G+T+F P D+AF              Q + L+ FH L  Y   + F+ L    P+ T AG     +Y L  T    +V I +  T T VSS V+S   +AVYQV++VLLP +IFG
Sbjct:   46 NLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAGG----QYSLKFTDVSGTVRIDSLWTRTKVSSSVFSTDPVAVYQVNRVLLPEAIFG 193          
BLAST of BQ623673 vs. ExPASy Swiss-Prot
Match: FLA10_ARATH (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 47/154 (30.52%), Postives = 78/154 (50.65%), Query Frame = 3
Query:    3 SGPTNATKILEKVGHFSFFIRLLKATTVRDQIERQLNDTNSGVTVFAPTDNAFXXXXXXXXXXXXDPQKELLIQFHVLSSYIPPTRFQTLRNPLRTNAGTNSRYEYPLNVTSSGNSVNISTGITNTSVSSIVYSDGQLAVYQVDKVLLPWSIFG 464
            +G +N T +LEK G    F  LL ++ V    E   +    G+TVFAP+D AF              +   L+++H L+ Y P    +T ++ + T A TN   +Y L  ++SG+ V + TG+  + ++  V  +  + ++ VD VLLP  +FG
Sbjct:  186 AGVSNITGLLEKAG-CKTFANLLVSSGVIKTFE---STVEKGLTVFAPSDEAFKARGVPDLTNLTQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLA-TNGAGKYDLTTSTSGDEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELFG 334          
BLAST of BQ623673 vs. ExPASy Swiss-Prot
Match: FLA8_ARATH (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 46/151 (30.46%), Postives = 75/151 (49.67%), Query Frame = 3
Query:   12 TNATKILEKVGHFSFFIRLLKATTVRDQIERQLNDTNSGVTVFAPTDNAFXXXXXXXXXXXXDPQKELLIQFHVLSSYIPPTRFQTLRNPLRTNAGTNSRYEYPLNVTSSGNSVNISTGITNTSVSSIVYSDGQLAVYQVDKVLLPWSIFG 464
            +N T +LEK G    F  LL ++ V    E  +     G+TVFAP+D AF              +   L+++H L+ Y P    +T +N + T A TN   ++ L  ++SG+ V + TG+  + ++  V     + ++ VD VLLP  +FG
Sbjct:  188 SNITGLLEKAG-CKTFANLLVSSGVLKTYESAVE---KGLTVFAPSDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLA-TNGAGKFDLTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELFG 333          
BLAST of BQ623673 vs. ExPASy Swiss-Prot
Match: FLA4_ARATH (Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 46/153 (30.07%), Postives = 78/153 (50.98%), Query Frame = 3
Query:   15 NATKILEKVGHFSFFIRLLKATTVRDQIERQLNDTNSGVTVFAPTDNAFXXXXXXXXXXXXDP-QKELLIQFHVLSSYIPPTRFQTLRNPLRTNAGTN--SRYEYPLNVTS-SGNSVNISTGITNTSVSSIVYSDGQLAVYQVDKVLLPWSIF 461
            N T+IL    +F+  + LL A+ V  + E   ++  +G+TVF PTD+AF               QK  +++FHVL SY      +++ NP++    T       Y LN++  +G+ V I++G+    V+   +    ++V+ V KVLLP  +F
Sbjct:  207 NLTQILINGHNFNVALSLLVASGVITEFEN--DERGAGITVFVPTDSAFSDLPSNVNLQSLPAEQKAFVLKFHVLHSYYTLGSLESITNPVQPTLATEEMGAGSYTLNISRVNGSIVTINSGVVLAVVTQTAFDQNPVSVFGVSKVLLPKELF 357          
The following BLAST results are available for this feature:
BLAST of BQ623673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FLA12_ARATH2.758e-4457.24Fasciclin-like arabinogalactan protein 12 OS=Arabi... [more]
FLA11_ARATH3.371e-4257.42Fasciclin-like arabinogalactan protein 11 OS=Arabi... [more]
FLA9_ARATH1.090e-2440.91Fasciclin-like arabinogalactan protein 9 OS=Arabid... [more]
FLA13_ARATH9.223e-2441.29Fasciclin-like arabinogalactan protein 13 OS=Arabi... [more]
FLA6_ARATH8.080e-2037.01Fasciclin-like arabinogalactan protein 6 OS=Arabid... [more]
FLA7_ARATH4.902e-1736.18Fasciclin-like arabinogalactan protein 7 OS=Arabid... [more]
FLA10_ARATH1.632e-1230.52Fasciclin-like arabinogalactan protein 10 OS=Arabi... [more]
FLA8_ARATH1.381e-1130.46Fasciclin-like arabinogalactan protein 8 OS=Arabid... [more]
FLA4_ARATH4.019e-1130.07Fasciclin-like arabinogalactan protein 4 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00764 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00764 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623673 ID=BQ623673; Name=BQ623673; organism=Citrus sinensis; type=EST; length=630bp
CTTCTGGCCCCACCAACGCCACCAAAATCCTCGAAAAAGTCGGTCACTTT
TCTTTTTTTATCCGGCTGCTGAAAGCCACAACAGTCCGTGACCAAATCGA
GCGCCAGCTGAATGACACAAACAGCGGCGTGACCGTCTTTGCACCTACTG
ATAATGCATTCTCTAGCCTCAGCTCAGGCACCCTCAACACCCTCAGCGAC
CCGCAAAAGGAGTTGTTGATTCAGTTTCATGTGCTCTCTTCATATATCCC
ACCAACACGATTCCAAACTTTGAGGAACCCTTTAAGAACAAACGCTGGAA
CTAACAGCAGATATGAGTATCCGCTTAATGTGACCTCATCTGGCAATTCA
GTGAACATTTCCACTGGCATTACTAACACTAGTGTGTCTAGTATTGTTTA
CTCCGATGGGCAGCTTGCTGTGTACCAAGTGGATAAGGTGCTGCTTCCTT
GGAGCATTTTTGGGGCTAAGCCTCCGGCAATGGCACCGGCACCGGCACCC
TTGAAACCGATAAAGCAGAATTCTACTGCTGTCGCGGACGGAGATGATAG
TACTGATGATGATGATCATAACATATTGAATGCCTCTGCTGCAGTGAGTC
TCATGGGCATGCAGCATGTGGGGGTTCTTG
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