BQ623679

Overview
NameBQ623679
Unique NameBQ623679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1002 contig Csv1_Contig1002:179..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.587e-56
Identity = 104/126 (82.54%), Postives = 111/126 (88.10%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            LKVNKAT+NML RVEPYVTYG+PNLKSV+ELIYKRGYGKLN QRIALTDNSI+EQALG+HGIIC EDLIHEILTVGPHFKEANNFLWPF            RNHYVEGGDAGNRE++INELIRRMN
Sbjct:  117 LKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.072e-56
Identity = 102/126 (80.95%), Postives = 112/126 (88.89%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            LKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRGYGKLN QRIALTDNSI++QALG+HGIIC+EDLIHEI+TVGPHFKEANNFLWPF            RNHYVEGGDAGNRE++INEL+RRMN
Sbjct:  117 LKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRMN 242          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 5.104e-55
Identity = 99/126 (78.57%), Postives = 110/126 (87.30%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            LKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRG+GKLN QR ALTDNSI++Q LG+HGIIC+EDLIHEI+TVGPHFKEANNFLWPF            RNHYVEGGDAGNRE++INEL+RRMN
Sbjct:  119 LKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.140e-46
Identity = 87/126 (69.05%), Postives = 102/126 (80.95%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            +K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  122 VKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 1.140e-46
Identity = 88/126 (69.84%), Postives = 101/126 (80.16%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            +K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS+I ++LG+ GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  145 VKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 270          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.140e-46
Identity = 87/126 (69.05%), Postives = 102/126 (80.95%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            +K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  122 VKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.140e-46
Identity = 87/126 (69.05%), Postives = 102/126 (80.95%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            +K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  123 VKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.140e-46
Identity = 87/126 (69.05%), Postives = 102/126 (80.95%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            +K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  123 VKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.944e-46
Identity = 87/126 (69.05%), Postives = 101/126 (80.16%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            +K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS++ ++LG+ GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  135 VKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 260          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 2.376e-44
Identity = 84/127 (66.14%), Postives = 103/127 (81.10%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAGNREDYINELIRRMN 379
            ++V KAT  M+  VEP+V YGYPNLKSV+ELIYKRGYGK+NKQR+ALTDNSIIE+ LG++GIICMEDLIHEI TVGP+FK+A+NFLWPF            +  H++EGGD GNRE++IN LIR+MN
Sbjct:  122 VRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGDLGNREEHINALIRQMN 248          
The following BLAST results are available for this feature:
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL72_ARATH1.587e-5682.5460S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL73_ARATH2.072e-5680.9560S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL74_ARATH5.104e-5578.5760S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL7_PONAB1.140e-4669.0560S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MOUSE1.140e-4669.8460S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_MACFA1.140e-4669.0560S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN1.140e-4669.0560S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN1.140e-4669.0560S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT1.944e-4669.0560S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_NEUCR2.376e-4466.1460S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00770 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00770 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623679 ID=BQ623679; Name=BQ623679; organism=Citrus sinensis; type=EST; length=466bp
TTTGAAAGTGAACAAAGCCACACTCAATATGCTGCACAGAGTTGAGCCCT
ATGTAACATATGGGTACCCCAATTTAAAGAGTGTCAGAGAACTGATTTAC
AAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTGCTTTGACCGACAA
TTCTATCATTGAACAGGCTCTTGGGCAGCATGGAATTATCTGCATGGAAG
ATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTTCAAGGAGGCAAAC
AACTTCCTATGGCCCTTCAAGCTCAAGGCACCATTGGGTGGCCTGAAGAA
GAAGAGGAACCACTATGTTGAAGGCGGTGATGCAGGAAACCGTGAAGATT
ACATCAATGAGCTCATCAGAAGGATGAACTAGGCTTCTGCAGAATATCCT
ACCCCTTTTGAAGAAGTTTTGATGTGATCAATATCTTAAATTTTGGCTTT
TGGTGGTTCCTATTCC
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