BQ623688

Overview
NameBQ623688
Unique NameBQ623688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6429 contig Csv1_Contig6429:406..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.619e-33
Identity = 71/85 (83.53%), Postives = 79/85 (92.94%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 256
            AEALE+IPYTLAENAGL+P++IVTELRN+HAQGEINSGINVRKG ITNIL+ENVVQPLLVSTSA+TLA E V M+LKIDDI T R
Sbjct:  449 AEALEIIPYTLAENAGLHPISIVTELRNKHAQGEINSGINVRKGAITNILQENVVQPLLVSTSALTLATETVVMLLKIDDIATAR 533          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.857e-30
Identity = 68/82 (82.93%), Postives = 74/82 (90.24%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 247
            A ALEVIP TLAENAGLNP+A VTELRNRHAQGE N+GINVRKG IT+IL ENVVQPLLVSTS+ITLA+E VR ILKIDDI+
Sbjct:  448 ANALEVIPSTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDII 529          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 3.159e-29
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 256
            A+A+EVIP TLAENAGLNP++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  458 ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDVVNTR 542          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 5.388e-29
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 256
            A+A+EVIP TLAENAGLNP++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  455 ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 5.388e-29
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 256
            A+A+EVIP TLAENAGLNP++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  455 ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 7.037e-29
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 256
            A+A+EVIP TLAENAGLNP++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  455 ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 125.946 bits (315), Expect = 7.037e-29
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 256
            A+A+EVIP TLAENAGLNP++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  455 ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.781e-28
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 256
            ++ALEVIP TLAENAGLNP++ VTELRNRHAQG+  +GINVRKG I+NI+EE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  452 SDALEVIPSTLAENAGLNPISTVTELRNRHAQGDKMAGINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDVVNAR 536          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 6.587e-27
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 256
            +EALE+IP TLAENAGLN + +VTELR+RHA GE  +GINVRKG +TNILEENV+QPLLV+ SAI LAAE  +MI+KIDDI   R
Sbjct:  443 SEALEIIPVTLAENAGLNAIQVVTELRSRHANGEKTAGINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDITLAR 527          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.283e-26
Identity = 57/82 (69.51%), Postives = 70/82 (85.37%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 247
            A+ALE+IPYTLAENAGL+P+  VTELRN HA G  + G+NVRKG +T+++EE+VVQPLLV+ SAI  A+ECVR ILKIDDIV
Sbjct:  455 ADALELIPYTLAENAGLSPIHTVTELRNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKIDDIV 536          
The following BLAST results are available for this feature:
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
TCPD_DICDI1.619e-3383.53T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPD_AEDTR2.857e-3082.93T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPD_BOVIN3.159e-2976.47T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPD_RAT5.388e-2976.47T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE5.388e-2976.47T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_PONAB7.037e-2976.47T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_HUMAN7.037e-2976.47T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_TAKRU7.781e-2874.12T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_SCHPO6.587e-2770.59T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPD_CAEEL7.283e-2669.51T-complex protein 1 subunit delta OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00779 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00779 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623688 ID=BQ623688; Name=BQ623688; organism=Citrus sinensis; type=EST; length=442bp
TGCAGAGGCACTTGAGGTTATTCCCTATACTTTGGCTGAGAATGCTGGGT
TGAACCCGCTTGCCATTGTGACTGAACTGAGGAACAGGCATGCACAAGGG
GAAATCAATTCTGGAATCAATGTGAGGAAGGGGCAGATTACCAATATTTT
GGAGGAGAATGTGGTGCAGCCACTGCTTGTGAGCACAAGTGCAATAACAC
TGGCTGCAGAGTGTGTAAGGATGATTTTGAAGATTGATGACATCGTTACT
GTGAGGTAGTTTTGCATCCAAAGATGAAAGTGTGTTCCCTACTTATGTTT
TGCGTCCTTGTATTATCTGAATTAGTAAGCTCTGTTTTAGGATTGATTGC
TGTTAAGAGTTTTGACTTTGTTATTTTTGTTGCCAAATATTTGGTTTGAA
TTTGCTGTTTTATGGTTAATTAGCAGTCGAATGACTGATTAA
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