BQ623689

Overview
NameBQ623689
Unique NameBQ623689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5848 contig Csv1_Contig5848:46..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623689 vs. ExPASy Swiss-Prot
Match: ELOC_RAT (Transcription elongation factor B polypeptide 1 OS=Rattus norvegicus GN=Tceb1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   85 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYSRGKE--TDFHIEPELTLELMMAANYL 354
            VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF + ++Y+       +F I PE+ LEL+MAAN+L
Sbjct:   19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110          
BLAST of BQ623689 vs. ExPASy Swiss-Prot
Match: ELOC_MOUSE (Transcription elongation factor B polypeptide 1 OS=Mus musculus GN=Tceb1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   85 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYSRGKE--TDFHIEPELTLELMMAANYL 354
            VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF + ++Y+       +F I PE+ LEL+MAAN+L
Sbjct:   19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110          
BLAST of BQ623689 vs. ExPASy Swiss-Prot
Match: ELOC_HUMAN (Transcription elongation factor B polypeptide 1 OS=Homo sapiens GN=TCEB1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   85 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYSRGKE--TDFHIEPELTLELMMAANYL 354
            VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF + ++Y+       +F I PE+ LEL+MAAN+L
Sbjct:   19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110          
BLAST of BQ623689 vs. ExPASy Swiss-Prot
Match: ELOC_BOVIN (Transcription elongation factor B polypeptide 1 OS=Bos taurus GN=TCEB1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   85 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYSRGKE--TDFHIEPELTLELMMAANYL 354
            VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF + ++Y+       +F I PE+ LEL+MAAN+L
Sbjct:   19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110          
BLAST of BQ623689 vs. ExPASy Swiss-Prot
Match: ELOC_SCHPO (Elongin-C OS=Schizosaccharomyces pombe GN=elc1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   73 KEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYSRGKE-TDFHIEPELTLELMMAANYL 354
            +++ V+LIS +GF F++ KE A +S TIR +L   G F+E +  E TFP+I  T+LEK+C+Y +++ +Y    +   F I PE+ LEL++ A YL
Sbjct:    2 EKEYVRLISGDGFVFILEKEIACLSGTIRAILNE-GIFSEAQKNECTFPDIRATLLEKVCEYLHYNYRYKNQLDIPKFDIPPEMVLELLVTAEYL 95          
BLAST of BQ623689 vs. ExPASy Swiss-Prot
Match: ELOC_DICDI (Transcription elongation factor B polypeptide 1 OS=Dictyostelium discoideum GN=tceb1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 37/97 (38.14%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   79 DTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGG-FAETEHGEVTFPEISTTILEKICQYFYWSLQYSRGKE--TDFHIEPELTLELMMAANYLHT 360
            D ++L S+ G EFV+S++ + VS TI++ML+     F E ++ E+ F EIST +LEK+ QYFY+  +Y+       +F I  ++ ++L++AA++L T
Sbjct:   13 DVLRLYSSTGHEFVLSRKMSYVSGTIKSMLSGDNSNFMEDQNNEIRFREISTPVLEKVIQYFYFKNKYTNSTTDLPEFPINEKVVVDLLLAAHFLDT 109          
The following BLAST results are available for this feature:
BLAST of BQ623689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELOC_RAT7.485e-1847.83Transcription elongation factor B polypeptide 1 OS... [more]
ELOC_MOUSE7.485e-1847.83Transcription elongation factor B polypeptide 1 OS... [more]
ELOC_HUMAN7.485e-1847.83Transcription elongation factor B polypeptide 1 OS... [more]
ELOC_BOVIN7.485e-1847.83Transcription elongation factor B polypeptide 1 OS... [more]
ELOC_SCHPO1.012e-1442.11Elongin-C OS=Schizosaccharomyces pombe GN=elc1 PE=... [more]
ELOC_DICDI2.109e-1238.14Transcription elongation factor B polypeptide 1 OS... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00780 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00780 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623689 ID=BQ623689; Name=BQ623689; organism=Citrus sinensis; type=EST; length=624bp
TTTGTTTGCGCCTACTTGAATAAAATCGAAGGTCATCGTTACCGGAGGCC
ATAATAAGAGAGCAAGATGAAGAAAGAAGATACAGTGAAGCTTATTAGCG
CGGAGGGATTCGAGTTCGTGATATCCAAAGAAGCCGCCATGGTCTCTCAA
ACCATCCGCAACATGCTCACCTCTCCAGGTGGTTTTGCTGAAACAGAGCA
CGGAGAAGTGACGTTCCCTGAGATAAGCACCACCATTCTTGAGAAGATTT
GTCAATACTTTTACTGGTCTCTTCAGTATTCCAGGGGCAAGGAGACTGAT
TTCCACATTGAGCCTGAACTAACTTTGGAGCTGATGATGGCTGCTAACTA
TCTCCATACTTGAGCCAAGCAGTGTTCTTACTTCATGAGCAGCAAGTTCT
TTGCCATCGCAAGCTTTCTGCTCCTTGTCTGGTTATCACAAACTGATTAA
TCATTTAGTTACCATCATGATTGTTTCACCTTTCTTTGTGTGTTGGCTTT
CAGAATTACTCAAGGATGAATTGTTGCCTGAGTAGCTTAAAAGATTGTAA
GATCTATTTTGAAGCCCGCATTGGAGTTCATTGCTCTATTGCAAGGAGGC
TTTTTTGAAAAAAACGTAAAAAAA
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