BQ623716

Overview
NameBQ623716
Unique NameBQ623716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ623716 vs. ExPASy Swiss-Prot
Match: PSNA_ARATH (Presenilin-like protein At1g08700 OS=Arabidopsis thaliana GN=At1g08700 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.440e-17
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 3 
Query:    3 LGCTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF 152
            LGCTLILLSV  RALPALPISI LGV+FYFLTRLLMEPFVVG TTNL+MF
Sbjct:  404 LGCTLILLSVYNRALPALPISIMLGVVFYFLTRLLMEPFVVGVTTNLMMF 453
[Close]
BLAST of BQ623716 vs. ExPASy Swiss-Prot
Match: PSNB_ARATH (Presenilin-like protein At2g29900 OS=Arabidopsis thaliana GN=At2g29900 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 3 
Query:    3 LGCTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF 152
            LG TL+LLSV ++ALPALP+SI LGV+FYFL RLL+E FVV  ++NL+MF
Sbjct:  348 LGITLMLLSVYQKALPALPVSIMLGVVFYFLARLLLEVFVVQCSSNLVMF 397
The following BLAST results are available for this feature:
BLAST of BQ623716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSNA_ARATH2.440e-1788.00Presenilin-like protein At1g08700 OS=Arabidopsis t... [more]
PSNB_ARATH2.000e-1168.00Presenilin-like protein At2g29900 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00807 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00807 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623716 ID=BQ623716; Name=BQ623716; organism=Citrus sinensis; type=EST; length=583bp
GACTTGGGTGCACTCTTATTTTGTTGTCTGTGTGCCGTCGAGCTCTACCC
GCCCTCCCAATTTCTATTACATTGGGCGTCCTATTTTACTTCTTGACTCG
GCTGTTAATGGAACCTTTTGTTGTAGGAACAACAACAAACCTTTTGATGT
TTTGATCCTCCATTTTTTGAAAGAGATAAAACTTTCTAAAGAAATACTGA
TGAATTTGTAGACTCGAGCGTTCTATGCATAGTGGAATTGTTTCTGGGAG
GTCAATCATTTCCTTCTGCTCATGTTAGTTTCTTGATTTGAGTTCTGATG
GGACAGTGCAGCATCTTGAAGAAAATCGGGTAATTCATTGAAATGTAGCC
TTTTGGGCCTTCTGTAGATTTGAGAATTAATAGAAGTATGTTGGCCATGG
CTTCTTCTGCACTTTTATTTTGACTAGAGTATATTGAAGTTTAGGATGCA
TATTCATAGTGTGGATTCTAGAAAGAAGCTGACACGCTTTCATCCGCTTA
CATGTGTATGCTTCTAATAATTGGTCAGACTATGTTAATTTGCTTCCACC
TCTACTGCAACGTTAATTTAAAAAAAAAAAAAA
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