BQ623717

Overview
NameBQ623717
Unique NameBQ623717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFC5_MOUSE (Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.166e-64
Identity = 125/205 (60.98%), Postives = 157/205 (76.59%), Query Frame = 2
Query:    2 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVREV 616
            + +M+LELNASDDRGID+VR  I  FAST++     K   KLV+LDEADAMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P  +  RL+HV++ E +D++E G+ ALV L +GDMR+ALNILQST+MA  ++TEE VY CTG+PL  DI  I  W+LN+ F  ++K I E+   KGLAL DI+ EV
Sbjct:   82 FGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTTAYKNIMELKTLKGLALHDILTEV 283          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFC5_HUMAN (Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.135e-64
Identity = 123/205 (60.00%), Postives = 158/205 (77.07%), Query Frame = 2
Query:    2 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVREV 616
            + +M+LELNASDDRGID++R  I  FAST++     K   KLV+LDEADAMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P  +  RL+HV+E E +D++E G+ ALV L +GDMR+ALNILQST+MA  ++TEE VY CTG+PL  DI  I  W+LN+ F  +++ I+E+   KGLAL DI+ E+
Sbjct:   83 FGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEI 284          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFC5_DICDI (Probable replication factor C subunit 5 OS=Dictyostelium discoideum GN=rfc5 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.783e-58
Identity = 118/204 (57.84%), Postives = 146/204 (71.57%), Query Frame = 2
Query:    2 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIV 607
            Y  M+LELNASDDRGIDVVR+QI+ FAS+  F F      KL++LDEAD+MT  AQ ALRRVIEKYTK TRF ++CN V KIIPALQSRCTRFRF+PL       RLK +IE E + V    + A++ L  GDMRK LNILQS  M+S    ITEEA+Y CTG P+P DIE +  WLLN  + ++F+ IS++  +KGL+L DI+
Sbjct:   86 YSRMVLELNASDDRGIDVVREQIKTFASSMFF-FNTTVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWLLNSDYEEAFQNISDLKKKKGLSLNDII 288          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFC3_SCHPO (Replication factor C subunit 3 OS=Schizosaccharomyces pombe GN=rfc3 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.741e-54
Identity = 107/202 (52.97%), Postives = 141/202 (69.80%), Query Frame = 2
Query:    2 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIV 607
            Y N ++ELNASDDRGID VR+QI++FAST+       ++ K+++LDEADAMT  AQ ALRRVIEKYTKN RF +ICN +NKI PA+QSRCTRFRF PL P  + + + HVI++E  ++      A++RL  GDMRKALNILQ+ H A   I   A+Y C G+P P DI+     ++N+ F  +F  IS +  +KGLAL DI+
Sbjct:   85 YRNQLMELNASDDRGIDAVREQIKNFASTRQI---FASTFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEFVIAFNTISSIKQQKGLALQDIL 283          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFC3_ARXAD (Replication factor C subunit 3 OS=Arxula adeninivorans GN=RFC3 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.203e-49
Identity = 108/206 (52.43%), Postives = 142/206 (68.93%), Query Frame = 2
Query:    2 YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM---ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIV 607
            Y NMILELNASD+RGIDVVR QI+ FAST Q FS G K    LV+LDEADAMT  AQ ALRR+IEKY+ +TRF ++ N  +K+ PAL SRCTRFRF+PL+   +  RL HVIE E +D++     +L+ L +GDMR+ALN+LQ+ +    A +QI+EE VY C G+P P DI  +   +L+ S+  +    S +   KGLAL D++
Sbjct:   79 YRNMILELNASDERGIDVVRDQIKTFASTRQIFSSGFK----LVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQAVLDGSWESALHTFSYIKQSKGLALADML 280          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFC5_CAEEL (Probable replication factor C subunit 5 OS=Caenorhabditis elegans GN=F44B9.8 PE=1 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 8.370e-49
Identity = 103/206 (50.00%), Postives = 134/206 (65.05%), Query Frame = 2
Query:    8 NMILELNASDDRGIDVVRQQIQDFAST---QSFSFGVKASV---KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIV 607
            +M+LELNASD+RGIDVVR  I +FA T   Q+FS          KLV+LDEADAMTKDAQ ALRRVIEKYT N RF +ICN +  I+PA+QSRCTRFRFAPL+   +  RL++++E E L +T  G  AL+ +  GDMR  +N LQST M+   ++E  VY C G P PK+++++   LLN+        I       G AL D++
Sbjct:   94 SMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVI 299          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFC3_YEAST (Replication factor C subunit 3 OS=Saccharomyces cerevisiae GN=RFC3 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.209e-47
Identity = 101/214 (47.20%), Postives = 140/214 (65.42%), Query Frame = 2
Query:    2 YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVREVTMV 625
            Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G K    L++LDEADAMT  AQ ALRRVIE+YTKNTRF ++ N  +K+ PAL SRCTRFRF PL    +  R+ +V+  E L ++     AL+ L NGDMR+ LN+LQS           +I+++ +Y C G P P D++ +   +L + +  +   ++++   KGLAL+D++  +  +
Sbjct:   75 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFK----LIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKI 284          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS_PYRHO (Replication factor C small subunit OS=Pyrococcus horikoshii GN=rfcS PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.406e-42
Identity = 86/201 (42.79%), Postives = 137/201 (68.16%), Query Frame = 2
Query:    5 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIV 607
            HN  LELNASD+RGI+V+R+++++FA T+       AS K++ LDEADA+T+DAQ ALRR +E ++ N RF L CN  +KII  +QSRC  FRF PL    + +RL+++ E EGL++TE GL A++ +  GDMR+A+NILQ+     ++IT+E V++      P+DI ++    L  +F  + +++ E+ +++GL+  D++
Sbjct:  604 HNF-LELNASDERGINVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVL 800          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS_PYRFU (Replication factor C small subunit OS=Pyrococcus furiosus GN=rfcS PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.406e-42
Identity = 86/201 (42.79%), Postives = 137/201 (68.16%), Query Frame = 2
Query:    5 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIV 607
            HN  LELNASD+RGI+V+R+++++FA T+       AS K++ LDEADA+T+DAQ ALRR +E ++ N RF L CN  +KII  +QSRC  FRF PL    + +RL+++ E EGL++TE GL A++ +  GDMR+A+NILQ+     ++IT+E V++      P+DI ++    L  +F  + +++ E+ +++GL+  D++
Sbjct:  602 HNF-LELNASDERGINVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVL 798          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS_UNCMA (Replication factor C small subunit OS=Uncultured methanogenic archaeon RC-I GN=rfcS PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 85/205 (41.46%), Postives = 126/205 (61.46%), Query Frame = 2
Query:    2 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVREV 616
            +H+  +ELNASD+RGIDVVR  I++FA T       +A  K++ LDEADA+T DAQ ALRR +E+Y    RF + CN  +KII  +QSRC  +RF PL    +T  +  + + EGL + + G+ AL+ +  GDMR+A+N LQS    ++ IT + +Y  T    PK+IE +    LN  F DS  ++ E+ +  GL+  DI+ ++
Sbjct:   67 WHSNFIELNASDERGIDVVRNNIKNFARTAPLG---EAKFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKLALNGQFMDSRNKLDELLITYGLSGTDIIDQI 268          
The following BLAST results are available for this feature:
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RFC5_MOUSE3.166e-6460.98Replication factor C subunit 5 OS=Mus musculus GN=... [more]
RFC5_HUMAN4.135e-6460.00Replication factor C subunit 5 OS=Homo sapiens GN=... [more]
RFC5_DICDI5.783e-5857.84Probable replication factor C subunit 5 OS=Dictyos... [more]
RFC3_SCHPO1.741e-5452.97Replication factor C subunit 3 OS=Schizosaccharomy... [more]
RFC3_ARXAD2.203e-4952.43Replication factor C subunit 3 OS=Arxula adeninivo... [more]
RFC5_CAEEL8.370e-4950.00Probable replication factor C subunit 5 OS=Caenorh... [more]
RFC3_YEAST1.209e-4747.20Replication factor C subunit 3 OS=Saccharomyces ce... [more]
RFCS_PYRHO3.406e-4242.79Replication factor C small subunit OS=Pyrococcus h... [more]
RFCS_PYRFU3.406e-4242.79Replication factor C small subunit OS=Pyrococcus f... [more]
RFCS_UNCMA2.883e-4141.46Replication factor C small subunit OS=Uncultured m... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00808 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00808 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623717 ID=BQ623717; Name=BQ623717; organism=Citrus sinensis; type=EST; length=632bp
ATATCACAATATGATTCTGGAGCTGAATGCGTCTGATGATAGAGGAATTG
ACGTTGTGCGGCAACAGATCCAAGATTTTGCTAGCACTCAAAGCTTCTCA
TTTGGTGTAAAGGCATCAGTCAAGCTGGTCTTGCTTGATGAGGCTGATGC
CATGACAAAGGATGCTCAGTTTGCCTTGCGTAGAGTGATTGAGAAATACA
CGAAGAACACTAGGTTTGCGCTTATCTGTAATCAGGTCAACAAGATTATT
CCAGCACTGCAGTCTAGATGTACCAGATTCCGATTTGCTCCTCTTGAACC
TGTTCATGTGACTGAGCGTCTCAAACATGTAATAGAGGCTGAAGGCCTTG
ATGTAACCGAGGGTGGCTTGGCAGCGCTTGTACGGCTTTGCAATGGTGAT
ATGAGAAAGGCCTTGAACATTTTGCAGTCAACACATATGGCGTCTCAGCA
AATTACAGAAGAAGCTGTATACTTGTGCACTGGAAACCCTTTGCCCAAGG
ACATTGAGCAAATATCTTACTGGCTTCTGAACGAATCATTTGCGGATAGT
TTCAAGCGAATATCTGAAATGACAATGAGGAAAGGATTGGCGTTGGTAGA
TATTGTGAGGGAAGTGACAATGGTTGGTTTTA
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