BQ623725

Overview
NameBQ623725
Unique NameBQ623725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:426..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.421e-62
Identity = 110/131 (83.97%), Postives = 118/131 (90.08%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLSPRWSI*PTG 393
            EIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+GGAEYYRITNGLD EDKL P     P G
Sbjct:   80 EIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLG 210          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.486e-24
Identity = 60/138 (43.48%), Postives = 78/138 (56.52%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG----LDLEDKLSPRWSI*PTG 393
            + PEYLTGE PGDYG+D  GLS  P  F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA +     LNY G    I   +++  +  ++VL+G AE YR   G    LD  D L P     P G
Sbjct:   49 DTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLG 186          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.908e-23
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLSPRWSI*PTG 393
            E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G   ++ D L P  S  P G
Sbjct:   67 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 201          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.908e-23
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLSPRWSI*PTG 393
            E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G   ++ D L P  S  P G
Sbjct:   68 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 202          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 62/134 (46.27%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    7 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLSPRWSI*PTG 393
            P YLTGE PGDYG+D  GLS  P+ F +Y+  ELIHARWAMLGA G   PE   K G   G EAVWFK GA +     L+Y G    +   N+V     +++L+G  E YR+  G   E  D L P  S  P G
Sbjct:   54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLG 186          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLSPRWSI*PTG 393
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L P  S  P G
Sbjct:   65 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLG 199          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.960e-23
Identity = 61/136 (44.85%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLSPRWSI*PTG 393
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YRI  G   ++ D L P  S  P G
Sbjct:   61 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 195          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 59/134 (44.03%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    7 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLSPRWSI*PTG 393
            P YLTGE PGDYG+D  GLS  P+ F KY+  E+IHARWA+LGA G + PE  + +      E VWFK GA +     L+Y G    I   N+V  +  ++VL+G  E YR+  G   E  D L P  S  P G
Sbjct:   56 PAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLG 189          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLSPRWSI*PTG 393
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G   ++ D L P  S  P G
Sbjct:   27 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 161          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.461e-23
Identity = 59/136 (43.38%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLSPRWSI*PTG 393
            E P YLTGE PGDYG+D  GLS  P++F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G    +    + A+ A +++L+G  E YRI  G   ++ D + P  S  P G
Sbjct:   73 EPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 207          
The following BLAST results are available for this feature:
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB26_ARATH5.421e-6283.97Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE4.486e-2443.48Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB28_PEA2.908e-2344.12Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA2.908e-2344.12Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2_CHLRE3.798e-2346.27Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_PETSP3.798e-2344.12Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB21_MAIZE4.960e-2344.85Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_CHLMO6.478e-2344.03Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PEA6.478e-2343.38Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2B_PINSY8.461e-2343.38Chlorophyll a-b binding protein type 2 member 1B, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00816 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00816 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623725 ID=BQ623725; Name=BQ623725; organism=Citrus sinensis; type=EST; length=395bp
GAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGA
TCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCAT
ATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATC
ATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGT
CTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACT
TCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATT
GTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCAACGGTTTGGATTT
GGAGGACAAGCTTTCACCCAGGTGGTCCATTTGACCCACTGGGAT
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