BQ623727

Overview
NameBQ623727
Unique NameBQ623727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1007 contig Csv1_Contig1007:257..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623727 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.196e-30
Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = 1
Query:   43 NTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKASD 477
            N +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+KNPYP  S+ K +D
Sbjct:   39 NEVRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPT-SDFKKTD 172          
BLAST of BQ623727 vs. ExPASy Swiss-Prot
Match: TIF3A_ARATH (Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.404e-15
Identity = 54/130 (41.54%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   94 LAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPY-PVQSEAKASDT 480
            + P+QLTI +GG   VFD IPA+KV+EI+ IAA++          T+  N  + +P L R+ S  S AS +A              C   A++P+ARR SLQRFFEKRR R V   PY    SEA  ++T
Sbjct:  127 ILPSQLTIIFGGSFSVFDGIPAEKVQEILHIAAAAKA--------TETINLTSINPALKRAISF-SNASTVA--------------CVSTADVPIARRRSLQRFFEKRRHRFVHTKPYSATTSEADKNET 233          
BLAST of BQ623727 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.294e-14
Identity = 53/132 (40.15%), Postives = 72/132 (54.55%), Query Frame = 1
Query:  109 LTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPR--AQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKASDTKAQTPA 498
            LTIFYGG+V VFD   A+K +E++ +A   +  + T      N N  A S        + S+ + + SP   A   P+Q N    L  ELP+ARR SL RF EKR+DR+ SK PY +   A+AS +K   PA
Sbjct:  120 LTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYS-----QKEIASSPNPVCSPAKTAAQEPIQPNP-ASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEAS-SKPTNPA 244          
BLAST of BQ623727 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 47/123 (38.21%), Postives = 63/123 (51.22%), Query Frame = 1
Query:  103 TQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVT--NTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEA 465
            +QLTIF+GGKV V++  P DK +EIM +A  +  VT  N      D  N   SS VL   P L          + Q    ++N + +      +ARR SL RFF KR+DR V++ PY V   A
Sbjct:   97 SQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVL---PDLNEPTDNNHLTKEQQQQQEQNQIVE-----RIARRASLHRFFAKRKDRAVARAPYQVNQNA 211          
The following BLAST results are available for this feature:
BLAST of BQ623727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TIF3B_ARATH2.196e-3049.66Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
TIF3A_ARATH3.404e-1541.54Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A ... [more]
TI10B_ARATH1.294e-1440.15Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11A_ARATH1.025e-1138.21Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00818 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00818 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623727 ID=BQ623727; Name=BQ623727; organism=Citrus sinensis; type=EST; length=618bp
TCTGCTGCAGGGCTTGATTTTTCGGGGAACGAGGTGTTTAACAACACCAT
CAGGGCCACGGCAATCCCAACTTCTGGAGTGAATGCCACGGACCTTGCTC
CAACTCAGCTTACGATCTTCTATGGTGGAAAAGTGTGTGTATTTGATGCA
ATTCCGGCAGACAAGGTTCGTGAAATTATGCTTATTGCTGCCTCTTCTGC
CACTGTTACTAACACAAGTGACATGAAGACGGACAATACCAACTGTCCTG
CCTCTTCACCAGTTCTAACAAGGTCTCCTTCACTGCAAAGCACTGCAAGT
GCTTTGGCATCACCTCGGGCACAATCATATCCTGTTCAAAGGAATCTCCT
CTGTAAATTGCAAGCTGAACTACCAATGGCAAGGAGGCATTCCCTTCAGC
GATTTTTCGAGAAGCGACGTGACAGGCTGGTGAGCAAGAATCCATATCCT
GTTCAATCAGAGGCAAAAGCTTCTGACACCAAAGCTCAGACTCCTGCAGA
GGCAGGTTGCTTTGAGAAAACTTCCGTGCCTCAGGAAGAATTGCAACCTA
AGGCTGCAGCCAATGTTGCATAAATTATCTATCTTGCTTAAATGTTTGGA
GTAAATAATCCAGAACTA
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